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Sodium in PDB 9bcz: Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine

Enzymatic activity of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine

All present enzymatic activity of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine:
3.1.4.11;

Protein crystallography data

The structure of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine, PDB code: 9bcz was solved by M.M.Edwards, A.Dong, N.Theo-Emegano, A.Seitova, P.Loppnau, R.Leung, H.Li, O.Ilyassov, A.M.Edwards, C.H.Arrowsmith, Structural Genomicsconsortium, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.59 / 1.99
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.182, 85.539, 98.433, 90, 112.04, 90
R / Rfree (%) 17.3 / 20.4

Other elements in 9bcz:

The structure of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine (pdb code 9bcz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine, PDB code: 9bcz:

Sodium binding site 1 out of 1 in 9bcz

Go back to Sodium Binding Sites List in 9bcz
Sodium binding site 1 out of 1 in the Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na706

b:34.5
occ:1.00
 N A:LEU187 3.1 22.5 1.0
OD2 A:ASP186 3.5 43.4 1.0
CG A:ASP186 3.6 30.0 1.0
CG A:LEU187 3.6 25.5 1.0
CA A:ASP186 3.6 23.8 1.0
OD1 A:ASP186 3.8 26.7 1.0
CB A:LEU187 3.8 24.0 1.0
CG2 A:ILE225 3.8 19.9 1.0
C A:ASP186 3.9 21.4 1.0
CD1 A:LEU187 4.0 27.4 1.0
CA A:LEU187 4.1 23.6 1.0
CB A:ASP186 4.2 26.2 1.0
O A:SER185 4.6 23.6 1.0
N A:ASP186 4.8 22.7 1.0
CD2 A:LEU187 4.9 24.7 1.0
CB A:ILE225 4.9 19.7 1.0

Reference:

M.M.Edwards, A.Dong, N.Theo-Emegano, A.Seitova, P.Loppnau, R.Leung, H.Li, O.Ilyassov, A.M.Edwards, C.H.Arrowsmith, Structural Genomics Consortium. Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine To Be Published.
Page generated: Mon Aug 18 16:35:40 2025

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