Sodium in PDB, part 301 (files: 12001-12040),
PDB 8y4w-8zmn
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12001-12040 (PDB 8y4w-8zmn).
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8y4w (Na: 3) - Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.
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8y4x (Na: 2) - Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.
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8y56 (Na: 1) - Cryo-Em Reveals Cholesterol Binding in the Lysosomal Gpcr-Like Protein Lychos
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8y5u (Na: 3) - Human NAS1 Intermediate State 1
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8y5w (Na: 4) - Human NAS1 Intermediate State 2
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8y5x (Na: 2) - Human NAS1 Intermediate State 3
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8y5z (Na: 2) - Human NAS1 Inward State
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8y6f (Na: 4) - The Crystal Structure of Mmps Cleavable Human Heavy Chain Ferritin
Other atoms:
Cl (4);
Fe (17);
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8y93 (Na: 1) - Structure of Net-Amitriptyline in Outward-Open State
Other atoms:
Cl (1);
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8y95 (Na: 2) - Structure of Net-Ne in Occluded State
Other atoms:
Cl (2);
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8ybg (Na: 1) - Crystal Structure of Lysozyme By Serial Synchrotron Crystallography
Other atoms:
Cl (2);
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8ybh (Na: 1) - Crystal Structure of Lysozyme By Macromolecular Crystallography
Other atoms:
Cl (2);
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8ydw (Na: 1) - Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Omicron Xbb.1.5 Variant Spike Protein in Complex with Cespiace
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8yec (Na: 8) - Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose
Other atoms:
Mg (16);
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8yh4 (Na: 7) - Chito Oligosaccharide Deacetylase From Vibrio Campbellii (Vhcod) in Complex with Chitosanbiose (Glcn)2
Other atoms:
Zn (4);
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8yja (Na: 1) - Structure of Vibrio Vulnificus Martx Cysteine Protease Domain Lacking Beta-Flap
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8yjc (Na: 1) - Structure of Vibrio Vulnificus Martx Cysteine Protease Domain C3727A
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8yk1 (Na: 3) - Blood Group B Alpha-1,3-Galactosidase Agabb From Bifidobacterium Bifidum, Construct 23-844
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8yk2 (Na: 1) - Blood Group B Alpha-1,3-Galactosidase Agabb From Bifidobacterium Bifidum, Construct T7-TAG_24-700
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8yk7 (Na: 1) - Structure of Rib Domain From Surface Adhesin of Limosilactobacillus Reuteri
Other atoms:
Cu (2);
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8yks (Na: 4) - Pathil in Complex with Amp-Pnp
Other atoms:
Mg (6);
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8you (Na: 1) - The Pmtcdh Complex Structure with An Inhibitor Secn
Other atoms:
Cu (7);
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8yrc (Na: 1) - Chlorinated Yabj From Staphylococcus Aureus
Other atoms:
Cl (1);
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8ysv (Na: 2) - Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis
Other atoms:
Ni (1);
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8yx0 (Na: 1) - Crystal Structure of Procambarus Clarkii Arginine Kinase
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8z2x (Na: 1) - Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose
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8z2y (Na: 1) - High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose
Other atoms:
Cl (1);
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8z62 (Na: 2) - Crystal Structure of Rrna (Uracil-C5)-Methyltransferase From Pyrococcus Horikoshii OT3
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8z76 (Na: 1) - The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months
Other atoms:
Cu (13);
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8z8u (Na: 2) - Crystal Structure of Line-1 Ribozyme Mutant - C39U
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8z9k (Na: 5) - Crystal Structure of Line-1 Ribozyme
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8zas (Na: 1) - Crystal Structure of Adenine Dna Aptamer Bound with Adenine
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8zau (Na: 2) - Crystal Structure of A Methyl Transferase Ribozyme Mutant - C29U and A59G
Other atoms:
Ba (5);
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8zbf (Na: 2) - Crystal Structure of the A58-T10 Dna Aptamer in Complex with Sars-Cov- 2 N-Ntd
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8zei (Na: 1) - Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine
Other atoms:
Zn (2);
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8zhy (Na: 2) - Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.
Other atoms:
Mg (2);
Zn (3);
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8zi7 (Na: 1) - Crystal Structure of SRUGT76G4 in Complex with Rubusoside
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8zj7 (Na: 1) - Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad.
Other atoms:
Cl (1);
Zn (4);
Mg (1);
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8zm7 (Na: 1) - Engineering Omega-Amine Transaminase For Extending Substrate Scope By Ancestral Sequence Reconstruction
Other atoms:
Cl (26);
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8zmn (Na: 1) - Crystal Structure of ANTXR1
Page generated: Mon Dec 15 11:18:40 2025
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