Atomistry » Sodium » PDB 8xxi-8zj7
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Sodium in PDB, part 301 (files: 12001-12040), PDB 8xxi-8zj7

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 12001-12040 (PDB 8xxi-8zj7).
  1. 8xxi (Na: 1) - Structure of Y+LAT1 Bound with Leu
  2. 8y2d (Na: 2) - Cryo-Em Structure of Human Dopamine Transporter in Complex with Dopamine
    Other atoms: Cl (1);
  3. 8y4w (Na: 3) - Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.
  4. 8y4x (Na: 2) - Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.
  5. 8y56 (Na: 1) - Cryo-Em Reveals Cholesterol Binding in the Lysosomal Gpcr-Like Protein Lychos
  6. 8y5u (Na: 3) - Human NAS1 Intermediate State 1
  7. 8y5w (Na: 4) - Human NAS1 Intermediate State 2
  8. 8y5x (Na: 2) - Human NAS1 Intermediate State 3
  9. 8y5z (Na: 2) - Human NAS1 Inward State
  10. 8y6f (Na: 4) - The Crystal Structure of Mmps Cleavable Human Heavy Chain Ferritin
    Other atoms: Cl (4); Fe (17);
  11. 8y93 (Na: 1) - Structure of Net-Amitriptyline in Outward-Open State
    Other atoms: Cl (1);
  12. 8y95 (Na: 2) - Structure of Net-Ne in Occluded State
    Other atoms: Cl (2);
  13. 8ybg (Na: 1) - Crystal Structure of Lysozyme By Serial Synchrotron Crystallography
    Other atoms: Cl (2);
  14. 8ybh (Na: 1) - Crystal Structure of Lysozyme By Macromolecular Crystallography
    Other atoms: Cl (2);
  15. 8ydw (Na: 1) - Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Omicron Xbb.1.5 Variant Spike Protein in Complex with Cespiace
  16. 8yec (Na: 8) - Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose
    Other atoms: Mg (16);
  17. 8yh4 (Na: 7) - Chito Oligosaccharide Deacetylase From Vibrio Campbellii (Vhcod) in Complex with Chitosanbiose (Glcn)2
    Other atoms: Zn (4);
  18. 8yja (Na: 1) - Structure of Vibrio Vulnificus Martx Cysteine Protease Domain Lacking Beta-Flap
  19. 8yjc (Na: 1) - Structure of Vibrio Vulnificus Martx Cysteine Protease Domain C3727A
  20. 8yk1 (Na: 3) - Blood Group B Alpha-1,3-Galactosidase Agabb From Bifidobacterium Bifidum, Construct 23-844
  21. 8yk2 (Na: 1) - Blood Group B Alpha-1,3-Galactosidase Agabb From Bifidobacterium Bifidum, Construct T7-TAG_24-700
  22. 8yk7 (Na: 1) - Structure of Rib Domain From Surface Adhesin of Limosilactobacillus Reuteri
    Other atoms: Cu (2);
  23. 8yks (Na: 4) - Pathil in Complex with Amp-Pnp
    Other atoms: Mg (6);
  24. 8you (Na: 1) - The Pmtcdh Complex Structure with An Inhibitor Secn
    Other atoms: Cu (7);
  25. 8yrc (Na: 1) - Chlorinated Yabj From Staphylococcus Aureus
    Other atoms: Cl (1);
  26. 8ysv (Na: 2) - Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis
    Other atoms: Ni (1);
  27. 8yx0 (Na: 1) - Crystal Structure of Procambarus Clarkii Arginine Kinase
  28. 8z2x (Na: 1) - Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose
  29. 8z2y (Na: 1) - High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose
    Other atoms: Cl (1);
  30. 8z62 (Na: 2) - Crystal Structure of Rrna (Uracil-C5)-Methyltransferase From Pyrococcus Horikoshii OT3
  31. 8z76 (Na: 1) - The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months
    Other atoms: Cu (13);
  32. 8z8u (Na: 2) - Crystal Structure of Line-1 Ribozyme Mutant - C39U
  33. 8z9k (Na: 5) - Crystal Structure of Line-1 Ribozyme
  34. 8zas (Na: 1) - Crystal Structure of Adenine Dna Aptamer Bound with Adenine
  35. 8zau (Na: 2) - Crystal Structure of A Methyl Transferase Ribozyme Mutant - C29U and A59G
    Other atoms: Ba (5);
  36. 8zbf (Na: 2) - Crystal Structure of the A58-T10 Dna Aptamer in Complex with Sars-Cov- 2 N-Ntd
  37. 8zei (Na: 1) - Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine
    Other atoms: Zn (2);
  38. 8zhy (Na: 2) - Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.
    Other atoms: Mg (2); Zn (3);
  39. 8zi7 (Na: 1) - Crystal Structure of SRUGT76G4 in Complex with Rubusoside
  40. 8zj7 (Na: 1) - Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad.
    Other atoms: Cl (1); Zn (4); Mg (1);
Page generated: Mon Aug 18 16:26:37 2025

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