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Sodium in PDB 8xxi: Structure of Y+LAT1 Bound with Leu

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Y+LAT1 Bound with Leu (pdb code 8xxi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Y+LAT1 Bound with Leu, PDB code: 8xxi:

Sodium binding site 1 out of 1 in 8xxi

Go back to Sodium Binding Sites List in 8xxi
Sodium binding site 1 out of 1 in the Structure of Y+LAT1 Bound with Leu


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Y+LAT1 Bound with Leu within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na602

b:30.0
occ:1.00
OH A:TYR389 2.2 42.7 1.0
OD2 A:ASP243 2.3 40.2 1.0
CG A:ASP243 3.3 40.2 1.0
CZ A:TYR389 3.4 42.7 1.0
O A:SER240 3.4 43.5 1.0
OD1 A:ASP243 3.8 40.2 1.0
C A:SER240 3.9 43.5 1.0
CE2 A:TRP242 3.9 40.6 1.0
CE1 A:TYR389 4.0 42.7 1.0
CZ2 A:TRP242 4.0 40.6 1.0
CA A:SER240 4.1 43.5 1.0
NE1 A:TRP242 4.1 40.6 1.0
CB A:ASP243 4.3 40.2 1.0
CG2 A:VAL393 4.3 42.4 1.0
CE2 A:TYR389 4.4 42.7 1.0
CD2 A:TRP242 4.5 40.6 1.0
CH2 A:TRP390 4.5 44.2 1.0
CB A:SER240 4.5 43.5 1.0
CH2 A:TRP242 4.5 40.6 1.0
N A:GLY241 4.6 40.5 1.0
N A:ASP243 4.7 40.2 1.0
CD1 A:TRP242 4.7 40.6 1.0
CZ3 A:TRP390 4.8 44.2 1.0
N A:TRP242 4.8 40.6 1.0
CG A:TRP242 4.9 40.6 1.0
CE3 A:TRP242 4.9 40.6 1.0
CZ3 A:TRP242 5.0 40.6 1.0

Reference:

R.H.Yan, L.Dai, T.Zhang. Structure of Y+LAT1 Bound with Leu To Be Published.
Page generated: Mon Aug 18 16:26:38 2025

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