Sodium in PDB 8zei: Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine

Enzymatic activity of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine

All present enzymatic activity of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine:
3.4.13.4;

Protein crystallography data

The structure of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine, PDB code: 8zei was solved by K.Chandravanshi, A.Kumar, R.D.Makde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	35.96 / 2.30
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	79.477, 115.308, 124.1, 90, 90, 90
*R / R_free (%)*	20.3 / 21.9

Other elements in 8zei:

The structure of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine (pdb code 8zei). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine, PDB code: 8zei:

Sodium binding site 1 out of 1 in 8zei

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Sodium Binding Sites List in 8zei

Sodium binding site 1 out of 1 in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na507 b:69.6 occ:1.00	N	A:ARG37	3.3	61.0	1.0
	NH1	A:ARG37	3.4	64.3	1.0
	CB	A:GLU36	3.5	76.2	1.0
	CG	A:ARG37	3.6	61.3	1.0
	CB	A:ARG37	3.6	58.2	1.0
	O	A:GLU33	3.8	66.9	1.0
	CD	A:ARG37	3.9	61.7	1.0
	CG	A:GLU36	4.0	76.9	1.0
	CA	A:ARG37	4.1	60.8	1.0
	N	A:GLU36	4.1	63.7	1.0
	CA	A:GLU36	4.1	65.0	1.0
	C	A:GLU36	4.1	61.8	1.0
	CA	A:ALA34	4.2	65.2	1.0
	C	A:ALA34	4.4	61.8	1.0
	CZ	A:ARG37	4.4	64.9	1.0
	O	A:ALA34	4.5	61.0	1.0
	OE2	A:GLU33	4.6	83.1	1.0
	NE	A:ARG37	4.6	61.4	1.0
	C	A:GLU33	4.8	66.6	1.0
	N	A:ALA35	4.9	58.6	1.0
	N	A:ALA34	5.0	70.2	1.0

Reference:

K.Chandravanshi, A.Kumar, R.D.Makde. Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine To Be Published.

Page generated: Mon Aug 18 16:31:15 2025

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