Sodium in PDB 8zi7: Crystal Structure of SRUGT76G4 in Complex with Rubusoside

The structure of Crystal Structure of SRUGT76G4 in Complex with Rubusoside, PDB code: 8zi7 was solved by Y.Wang, T.Li, H.Yin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.50 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	74.026, 77.228, 86.134, 90, 90, 90
R / Rfree (%)	18.3 / 23.2

The binding sites of Sodium atom in the Crystal Structure of SRUGT76G4 in Complex with Rubusoside (pdb code 8zi7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of SRUGT76G4 in Complex with Rubusoside, PDB code: 8zi7:

Sodium binding site 1 out of 1 in the Crystal Structure of SRUGT76G4 in Complex with Rubusoside


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of SRUGT76G4 in Complex with Rubusoside within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:72.3 occ:1.00 O A:GLY330 2.3 62.0 1.0 C A:GLY330 3.3 75.5 1.0 N A:GLY330 3.4 64.2 1.0 CA A:GLY330 3.7 76.2 1.0 CB A:LEU329 3.7 59.8 1.0 O A:HOH618 3.8 57.7 1.0 C A:LEU329 4.0 65.5 1.0 OE1 A:GLU331 4.2 93.1 1.0 CA A:LEU329 4.5 67.6 1.0 N A:GLU331 4.5 75.1 1.0 O A:PHE328 4.6 84.3 1.0 O A:LEU329 4.6 63.9 1.0 CG A:LEU329 4.8 68.0 1.0 CD1 A:LEU329 4.8 75.4 1.0

Y.Wang, T.Li, H.Yin. Functional Characterization and Structural Insights Into SRUGT76G1-4 From Stevia Rebaudioside Reveal A Residue Critical For the Regioselectivity and Efficient Rebaudioside M Synthesis To Be Published.