Sodium in PDB, part 294 (files: 11721-11760),
PDB 8sv3-8tv2
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11721-11760 (PDB 8sv3-8tv2).
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8sv3 (Na: 2) - 7-Deazapurines and 5-Halogenpyrimidine Dna Duplex
Other atoms:
Cl (5);
F (10);
Mg (1);
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8sxw (Na: 1) - X-Ray Crystal Structure of Udp- 2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27, D98N Mutation, Apo Structure at pH 6
Other atoms:
Cl (2);
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8sy0 (Na: 2) - X-Ray Crystal Structure of Udp- 2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27 in Complex with Its Product Udp-2,3-Diacetamido-2,3-Dideoxy-D-Mannuronic Acid at pH 9
Other atoms:
Cl (1);
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8syb (Na: 1) - X-Ray Crystal Structure of Udp-2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27, D98N Variant in the Presence of Udp-2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid and Udp-N-Acetylglucosamine at pH 9
Other atoms:
Cl (2);
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8szz (Na: 24) - Cryoem Structure of Computationally Designed Nanocage O32-ZL4
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8t0c (Na: 2) - TRPV1 in Nanodisc Bound with Lysophosphatidic Acid in All Four Monomers
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8t0e (Na: 1) - TRPV1 in Nanodisc Not Bound with Lysophosphatidic Acid (Apo)
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8t0y (Na: 1) - TRPV1 in Nanodisc Bound with One Lpa in One Monomer
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8t10 (Na: 2) - TRPV1 in Nanodisc Bound with Two Lpa Molecules in Opposite Monomers
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8t1b (Na: 4) - Cryo-Em Structure of Full-Length Human TRPV4 in Apo State
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8t1e (Na: 3) - Closed-State Cryo-Em Structure of Full-Length Human TRPV4 in the Presence of 4A-Pdd
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8t1v (Na: 1) - Crystal Structure of Orphan G Protein-Coupled Receptor 6 with Bound Inverse Agonist 3H
Other atoms:
F (2);
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8t3l (Na: 2) - TRPV1 in Nanodisc Bound with 2 Lpa Molecules in Neighboring Monomers
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8t3m (Na: 2) - TRPV1 in Nanodisc Bound with 3 Lpa Molecules
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8t7i (Na: 7) - Structure of the S1CE Variant of Fab F1 (FABS1CE-F1)
Other atoms:
Cl (4);
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8t8l (Na: 1) - Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21
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8t9u (Na: 1) - Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg)
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8ta1 (Na: 1) - Crystal Structure of Dihydrofolate Reductase (Dhfr) From Mycobacterium Ulcerans AGY99 in Complex with Nadp and Inhibitor MAM907
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8tb2 (Na: 1) - Structure of Sasg (Type II) (Residues 165-421) From Staphylococcus Aureus MW2
Other atoms:
Zn (3);
Ca (2);
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8tc8 (Na: 4) - Human Asparaginyl-Trna Synthetase Bound to Adenosine 5'-Sulfamate
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8thi (Na: 2) - Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Haemophilus Influenzae (Parallel Dimer)
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8thj (Na: 4) - Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Haemophilus Influenzae (Antiparallel Dimer)
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8tjj (Na: 1) - Sam-Dependent Methyltransferase Redm Bound to Sam
Other atoms:
K (1);
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8tkb (Na: 1) - Trna 2-Phosphotransferase (TPT1) From Pyrococcus Horikoshii in Complex with 5'-Amp
Other atoms:
Cl (7);
K (4);
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8tkz (Na: 1) - Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4
Other atoms:
Cl (2);
Zn (2);
Co (1);
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8tm8 (Na: 2) - Monomer Structure of Monellin LOOP1 Mutant (Yenkg)
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8tmt (Na: 2) - Crystal Structure of Kpc-44 Carbapenemase in Complex with Vaborbactam
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8tn4 (Na: 1) - The Crystal Structure of A Human Monoclonal Antibody (Aab), Termed TG10, Used to Study Poly-N-Acetyl-Glucosamine Broadly Expressed in Biofilm-Forming Pathogenclonal Antibody
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8ton (Na: 1) - Crystal Structure of Engineered Mouse Protocadherin-15 EC3-EC7 Connection
Other atoms:
K (1);
Ca (1);
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8tqs (Na: 1) - Complex of Human Thrombin (S195A) Bound to A Bivalent Inhibitor Comprised of Dna Aptamer HD22 Conjugated to Dabigatran with A Linker.
Other atoms:
Mg (1);
-
8tr5 (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in the Apo Closed State
Other atoms:
Zn (6);
-
8tr6 (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in Complex with the Allosteric Antagonist A438079
Other atoms:
Zn (6);
Cl (6);
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8tr7 (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in Complex with the Allosteric Antagonist A839977
Other atoms:
Cl (6);
Zn (6);
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8tr8 (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in Complex with the Allosteric Antagonist AZD9056
Other atoms:
Zn (6);
Cl (3);
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8tra (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in Complex with the Allosteric Antagonist GSK1482160
Other atoms:
Cl (3);
F (9);
Zn (6);
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8trs (Na: 1) - Structure of the EPHA2 Crd Bound to FABS1CE_C1, Trigonal Form
Other atoms:
Cl (18);
-
8trt (Na: 2) - Structure of the EPHA2 Crd Bound to FABS1CE_C1, Monoclinic Form
Other atoms:
Cl (4);
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8trv (Na: 4) - Structure of the EPHA2 Lbdcrd Bound to FABS1C_C1
Other atoms:
I (5);
Cl (10);
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8ts5 (Na: 8) - Structure of the Apo FABS1C_C1
Other atoms:
Cl (2);
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8tv2 (Na: 2) - Structure of Apo FABS1C_L1
Other atoms:
Cl (8);
Page generated: Mon Dec 15 11:18:24 2025
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