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Sodium in PDB, part 294 (files: 11721-11760), PDB 8st6-8trt

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11721-11760 (PDB 8st6-8trt).
  1. 8st6 (Na: 2) - Hsa Siglec + Unique Domains Bound to NEU5GC ALPHA2,3 Gal Beta Ome
  2. 8stn (Na: 1) - Crystal Structure of Kras-G12D/G75A Mutant, Gdp-Bound
    Other atoms: Cl (2); Mg (2);
  3. 8sv0 (Na: 2) - The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII
  4. 8sv3 (Na: 2) - 7-Deazapurines and 5-Halogenpyrimidine Dna Duplex
    Other atoms: Cl (5); F (10); Mg (1);
  5. 8sxw (Na: 1) - X-Ray Crystal Structure of Udp- 2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27, D98N Mutation, Apo Structure at pH 6
    Other atoms: Cl (2);
  6. 8sy0 (Na: 2) - X-Ray Crystal Structure of Udp- 2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27 in Complex with Its Product Udp-2,3-Diacetamido-2,3-Dideoxy-D-Mannuronic Acid at pH 9
    Other atoms: Cl (1);
  7. 8syb (Na: 1) - X-Ray Crystal Structure of Udp-2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27, D98N Variant in the Presence of Udp-2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid and Udp-N-Acetylglucosamine at pH 9
    Other atoms: Cl (2);
  8. 8szz (Na: 24) - Cryoem Structure of Computationally Designed Nanocage O32-ZL4
  9. 8t0c (Na: 2) - TRPV1 in Nanodisc Bound with Lysophosphatidic Acid in All Four Monomers
  10. 8t0e (Na: 1) - TRPV1 in Nanodisc Not Bound with Lysophosphatidic Acid (Apo)
  11. 8t0y (Na: 1) - TRPV1 in Nanodisc Bound with One Lpa in One Monomer
  12. 8t10 (Na: 2) - TRPV1 in Nanodisc Bound with Two Lpa Molecules in Opposite Monomers
  13. 8t1b (Na: 4) - Cryo-Em Structure of Full-Length Human TRPV4 in Apo State
  14. 8t1e (Na: 3) - Closed-State Cryo-Em Structure of Full-Length Human TRPV4 in the Presence of 4A-Pdd
  15. 8t1v (Na: 1) - Crystal Structure of Orphan G Protein-Coupled Receptor 6 with Bound Inverse Agonist 3H
    Other atoms: F (2);
  16. 8t3l (Na: 2) - TRPV1 in Nanodisc Bound with 2 Lpa Molecules in Neighboring Monomers
  17. 8t3m (Na: 2) - TRPV1 in Nanodisc Bound with 3 Lpa Molecules
  18. 8t7i (Na: 7) - Structure of the S1CE Variant of Fab F1 (FABS1CE-F1)
    Other atoms: Cl (4);
  19. 8t8l (Na: 1) - Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21
  20. 8t9u (Na: 1) - Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg)
  21. 8ta1 (Na: 1) - Crystal Structure of Dihydrofolate Reductase (Dhfr) From Mycobacterium Ulcerans AGY99 in Complex with Nadp and Inhibitor MAM907
  22. 8tb2 (Na: 1) - Structure of Sasg (Type II) (Residues 165-421) From Staphylococcus Aureus MW2
    Other atoms: Zn (3); Ca (2);
  23. 8tc8 (Na: 4) - Human Asparaginyl-Trna Synthetase Bound to Adenosine 5'-Sulfamate
  24. 8thi (Na: 2) - Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Haemophilus Influenzae (Parallel Dimer)
  25. 8thj (Na: 4) - Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Haemophilus Influenzae (Antiparallel Dimer)
  26. 8tjj (Na: 1) - Sam-Dependent Methyltransferase Redm Bound to Sam
    Other atoms: K (1);
  27. 8tkb (Na: 1) - Trna 2-Phosphotransferase (TPT1) From Pyrococcus Horikoshii in Complex with 5'-Amp
    Other atoms: Cl (7); K (4);
  28. 8tkz (Na: 1) - Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4
    Other atoms: Cl (2); Zn (2); Co (1);
  29. 8tm8 (Na: 2) - Monomer Structure of Monellin LOOP1 Mutant (Yenkg)
  30. 8tmt (Na: 2) - Crystal Structure of Kpc-44 Carbapenemase in Complex with Vaborbactam
  31. 8tn4 (Na: 1) - The Crystal Structure of A Human Monoclonal Antibody (Aab), Termed TG10, Used to Study Poly-N-Acetyl-Glucosamine Broadly Expressed in Biofilm-Forming Pathogenclonal Antibody
  32. 8ton (Na: 1) - Crystal Structure of Engineered Mouse Protocadherin-15 EC3-EC7 Connection
    Other atoms: K (1); Ca (1);
  33. 8tqs (Na: 1) - Complex of Human Thrombin (S195A) Bound to A Bivalent Inhibitor Comprised of Dna Aptamer HD22 Conjugated to Dabigatran with A Linker.
    Other atoms: Mg (1);
  34. 8tr5 (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in the Apo Closed State
    Other atoms: Zn (6);
  35. 8tr6 (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in Complex with the Allosteric Antagonist A438079
    Other atoms: Zn (6); Cl (6);
  36. 8tr7 (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in Complex with the Allosteric Antagonist A839977
    Other atoms: Cl (6); Zn (6);
  37. 8tr8 (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in Complex with the Allosteric Antagonist AZD9056
    Other atoms: Zn (6); Cl (3);
  38. 8tra (Na: 1) - Cryo-Em Structure of the Rat P2X7 Receptor in Complex with the Allosteric Antagonist GSK1482160
    Other atoms: Cl (3); F (9); Zn (6);
  39. 8trs (Na: 1) - Structure of the EPHA2 Crd Bound to FABS1CE_C1, Trigonal Form
    Other atoms: Cl (18);
  40. 8trt (Na: 2) - Structure of the EPHA2 Crd Bound to FABS1CE_C1, Monoclinic Form
    Other atoms: Cl (4);
Page generated: Sat Aug 23 06:32:32 2025

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