Sodium in PDB 8t9u: Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg)

The structure of Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg), PDB code: 8t9u was solved by J.R.Terrell, G.M.K.Poon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.26 / 1.47
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.021, 60.622, 44.562, 90, 116.79, 90
R / Rfree (%)	14.5 / 18.1

The binding sites of Sodium atom in the Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg) (pdb code 8t9u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg), PDB code: 8t9u:

Sodium binding site 1 out of 1 in the Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Pu.1 Ets-Domain (165-270) in Complex with D(Aataagcgiaagtggg) within 5.0Å range: probe atom residue distance (Å) B Occ C:Na101 b:61.7 occ:1.00 OP2 C:DA5 2.2 38.2 1.0 H8 C:DA5 2.4 34.6 1.0 O C:HOH216 2.7 45.3 1.0 H2'' C:DA4 2.8 43.9 1.0 O5' C:DA5 3.0 36.0 1.0 O F:HOH404 3.0 47.3 1.0 P C:DA5 3.2 37.7 1.0 H2' C:DA5 3.2 37.6 1.0 C8 C:DA5 3.3 28.9 1.0 HE3 F:LYS206 3.5 24.8 1.0 C2' C:DA4 3.6 36.6 1.0 HZ1 F:LYS206 3.6 26.0 1.0 H2' C:DA4 3.6 43.9 1.0 HE2 F:LYS206 3.8 24.8 1.0 HE21 F:GLN226 3.9 26.2 0.4 CE F:LYS206 4.0 20.7 1.0 O3' C:DA4 4.1 37.3 1.0 H3' C:DA4 4.1 44.3 1.0 C2' C:DA5 4.1 31.4 1.0 HD2 F:TYR225 4.1 23.5 1.0 C3' C:DA4 4.1 36.9 1.0 N7 C:DA5 4.1 28.6 1.0 NZ F:LYS206 4.2 21.7 1.0 N9 C:DA5 4.3 29.0 1.0 H3' C:DA5 4.3 37.8 1.0 C5' C:DA5 4.3 33.8 1.0 OP1 C:DA5 4.4 39.0 1.0 O4' C:DA5 4.5 30.6 1.0 C1' C:DA5 4.5 30.0 1.0 HD21 F:LEU248 4.5 26.4 1.0 HG2 F:GLN226 4.6 23.5 0.4 HE2 F:TYR225 4.6 24.0 1.0 C3' C:DA5 4.6 31.5 1.0 NE2 F:GLN226 4.7 21.9 0.4 C4' C:DA5 4.7 32.6 1.0 HZ2 F:LYS206 4.7 26.0 1.0 H5' C:DA5 4.8 40.6 1.0 H2'' C:DA5 4.8 37.6 1.0 CD2 F:TYR225 4.8 19.6 1.0 HZ3 F:LYS206 4.8 26.0 1.0 O F:HOH306 4.9 35.0 1.0 H5'' C:DA5 4.9 40.6 1.0 C1' C:DA4 4.9 35.5 1.0

T.N.Vernon, J.R.Terrell, A.L.Schneider, A.V.Albrecht, M.W.Germann, W.D.Wilson, G.M.K.Poon. Dissecting the Hydration and Dynamics of Protein/Dna Readout: Modeling with the Ets-Family Transcription Factor Pu.1 To Be Published.