Sodium in PDB 8tm8: Monomer Structure of Monellin LOOP1 Mutant (Yenkg)

The structure of Monomer Structure of Monellin LOOP1 Mutant (Yenkg), PDB code: 8tm8 was solved by R.Manjula, G.C.Pavithra, S.Ramaswamy, S.Gosavi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.18 / 2.26
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	29.139, 58.789, 45.21, 90, 91.91, 90
R / Rfree (%)	19.2 / 26.1

The binding sites of Sodium atom in the Monomer Structure of Monellin LOOP1 Mutant (Yenkg) (pdb code 8tm8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Monomer Structure of Monellin LOOP1 Mutant (Yenkg), PDB code: 8tm8:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Monomer Structure of Monellin LOOP1 Mutant (Yenkg)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Monomer Structure of Monellin LOOP1 Mutant (Yenkg) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na101 b:19.6 occ:1.00 H B:TYR57 1.9 23.4 1.0 HA B:LEU56 2.6 26.8 1.0 O B:ILE38 2.6 22.9 1.0 O B:PRO40 2.7 20.3 1.0 N B:TYR57 2.8 19.5 1.0 HA B:CYS41 2.8 27.2 1.0 HB2 B:CYS41 3.0 26.1 1.0 HG13 B:VAL37 3.0 21.3 1.0 HB2 B:TYR57 3.2 22.3 1.0 C B:PRO40 3.3 17.6 1.0 CA B:LEU56 3.3 22.3 1.0 HG12 B:VAL37 3.3 21.3 1.0 CA B:CYS41 3.4 22.7 1.0 HG B:LEU56 3.5 25.5 1.0 HB3 B:LEU56 3.5 25.5 1.0 CG1 B:VAL37 3.5 17.7 1.0 C B:LEU56 3.5 22.1 1.0 HD1 B:TYR57 3.5 27.1 1.0 N B:CYS41 3.5 22.8 1.0 CB B:CYS41 3.6 21.8 1.0 HG11 B:VAL37 3.6 21.3 1.0 O B:TYR57 3.6 15.7 1.0 CB B:LEU56 3.8 21.2 1.0 CA B:TYR57 3.8 18.9 1.0 C B:ILE38 3.9 21.1 1.0 CB B:TYR57 3.9 18.6 1.0 H B:ILE38 4.1 20.9 1.0 CG B:LEU56 4.1 21.2 1.0 C B:TYR57 4.1 18.2 1.0 HA B:ARG39 4.1 25.9 1.0 H B:CYS41 4.2 27.3 1.0 SG B:CYS41 4.2 23.0 1.0 O B:GLN55 4.3 19.5 1.0 CD1 B:TYR57 4.3 22.6 1.0 HB3 B:CYS41 4.4 26.1 1.0 HG13 B:ILE38 4.4 21.4 1.0 N B:ILE38 4.5 17.4 1.0 CA B:PRO40 4.5 21.6 1.0 HD12 B:LEU56 4.5 33.6 1.0 N B:PRO40 4.5 21.2 1.0 N B:LEU56 4.5 22.2 1.0 O B:HOH203 4.6 21.0 1.0 C B:ARG39 4.6 20.7 1.0 HA B:TYR57 4.6 22.7 1.0 CG B:TYR57 4.7 22.1 1.0 HG22 B:ILE8 4.7 35.2 1.0 CA B:ARG39 4.7 21.6 1.0 HB2 B:LEU56 4.7 25.5 1.0 O B:LEU56 4.7 23.1 1.0 HB3 B:TYR57 4.7 22.3 1.0 N B:ARG39 4.7 21.5 1.0 CA B:ILE38 4.8 16.3 1.0 C B:CYS41 4.8 20.8 1.0 H B:MET42 4.8 23.9 1.0 HG21 B:THR12 4.8 24.2 1.0 HG21 B:ILE8 4.9 35.2 1.0 HA B:PRO40 4.9 26.0 1.0 C B:GLN55 4.9 20.8 1.0 CD1 B:LEU56 4.9 28.1 1.0 CB B:VAL37 4.9 16.0 1.0

Sodium binding site 2 out of 2 in the Monomer Structure of Monellin LOOP1 Mutant (Yenkg)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Monomer Structure of Monellin LOOP1 Mutant (Yenkg) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na102 b:26.7 occ:1.00 HH12 B:ARG78 2.0 25.4 1.0 HH22 B:ARG78 2.2 23.5 1.0 NH1 B:ARG78 2.7 21.2 1.0 HB2 B:ASN14 2.8 21.9 1.0 O B:PHE11 2.9 17.6 1.0 NH2 B:ARG78 2.9 19.6 1.0 HG B:LEU15 3.1 30.4 1.0 HB3 B:ASN14 3.2 21.9 1.0 CZ B:ARG78 3.2 22.4 1.0 CB B:ASN14 3.4 18.3 1.0 HH11 B:ARG78 3.4 25.4 1.0 H B:LEU15 3.5 18.1 1.0 HA B:PHE11 3.5 25.3 1.0 CD2 B:PHE11 3.6 25.8 1.0 N B:LEU15 3.6 15.1 1.0 HH21 B:ARG78 3.6 23.5 1.0 CE2 B:PHE11 3.7 23.6 1.0 HD2 B:PHE11 3.8 31.0 1.0 C B:PHE11 3.8 21.7 1.0 C B:ASN14 3.9 16.7 1.0 CG B:PHE11 3.9 24.4 1.0 HE2 B:PHE11 3.9 28.4 1.0 CG B:LEU15 4.0 25.3 1.0 CA B:PHE11 4.1 21.1 1.0 HA B:LEU15 4.1 22.1 1.0 HD22 B:ASN14 4.1 24.6 1.0 CZ B:PHE11 4.2 23.7 1.0 CA B:ASN14 4.2 18.5 1.0 CA B:LEU15 4.3 18.4 1.0 CD1 B:PHE11 4.4 22.3 1.0 CE1 B:PHE11 4.5 22.6 1.0 O B:ASN14 4.5 16.3 1.0 HD23 B:LEU15 4.5 24.2 1.0 H B:ASN14 4.5 22.6 1.0 HD21 B:LEU15 4.6 24.2 1.0 NE B:ARG78 4.6 27.0 1.0 CB B:PHE11 4.6 24.6 1.0 CG B:ASN14 4.6 17.6 1.0 CB B:LEU15 4.6 20.7 1.0 HZ B:PHE11 4.6 28.4 1.0 HD12 B:LEU15 4.6 27.2 1.0 CD2 B:LEU15 4.7 20.2 1.0 ND2 B:ASN14 4.7 20.5 1.0 HB2 B:LEU15 4.8 24.9 1.0 N B:ASN14 4.8 18.8 1.0 HD1 B:PHE11 4.9 26.8 1.0 CD1 B:LEU15 4.9 22.7 1.0

G.C.Pavithra, R.Manjula, S.Ramaswamy, S.Gosavi. Monomer Structure of Monellin LOOP1 Mutant (Yenkg) To Be Published.