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Sodium in PDB, part 264 (files: 10521-10560), PDB 7snj-7th5

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 10521-10560 (PDB 7snj-7th5).
  1. 7snj (Na: 1) - Structure of BACPLE_01701, A 6-O-Galactose Porphyran Sulfatase
  2. 7sno (Na: 1) - Structure of BACPLE_01701(H214N), A 6-O-Galactose Porphyran Sulfatase
  3. 7soi (Na: 1) - Structure of I552A Soybean Lipoxygenase at 277K
    Other atoms: Fe (2);
  4. 7soo (Na: 1) - Lam Domain of Human LARP1
  5. 7sq3 (Na: 1) - Designed Trefoil Knot Protein, Variant 1
    Other atoms: Cl (1);
  6. 7sq4 (Na: 1) - Designed Trefoil Knot Protein, Variant 2
  7. 7sq5 (Na: 2) - Designed Trefoil Knot Protein, Variant 3
  8. 7sq6 (Na: 2) - Cryo-Em Structure of Mouse Agonist Ml-SA1-Bound TRPML1 Channel at 2.32 Angstrom Resolution
  9. 7sq7 (Na: 1) - Cryo-Em Structure of Mouse Pi(3,5)P2-Bound TRPML1 Channel at 2.41 Angstrom Resolution
  10. 7sq8 (Na: 1) - Cryo-Em Structure of Mouse Apo TRPML1 Channel at 2.598 Angstrom Resolution
  11. 7sq9 (Na: 2) - Cryo-Em Structure of Mouse Temsirolimus/Pi(3,5)P2-Bound TRPML1 Channel at 2.11 Angstrom Resolution
  12. 7sqi (Na: 2) - Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, Fabb, and C14-Crypto Acyl Carrier Protein, Acpp
  13. 7stt (Na: 3) - Crystal Structure of Sulfatase From Pedobacter Yulinensis
    Other atoms: Ca (1); Cl (1);
  14. 7stu (Na: 3) - Crystal Structure of Sulfatase From Pedobacter Yulinensis
    Other atoms: Br (5); Ca (1);
  15. 7stv (Na: 2) - Crystal Structure of Sulfatase From Pedobacter Yulinensis
    Other atoms: Cl (2); Ca (1);
  16. 7sub (Na: 2) - 3-Oxoacyl-Acp Reductase Fabg
  17. 7sxl (Na: 2) - Plasmodium Falciparum Apicoplast Dna Polymerase (Exo-Minus) Without Affinity Tag
    Other atoms: Cl (8);
  18. 7sxm (Na: 1) - Structure of Xenon-Derivatized Methyl-Coenzyme M Reductase From Methanothermobacter Marburgensis
    Other atoms: Mg (2); Ni (2); Xe (8);
  19. 7sxq (Na: 2) - Plasmodium Falciparum Apicoplast Dna Polymerase (Exo-Minus) Without Affinity Tag
    Other atoms: Cl (6);
  20. 7syv (Na: 1) - Structure of the Wt Ires EIF5B-Containing Pre-48S Initiation Complex, Open Conformation. Structure 14(Wt)
    Other atoms: Zn (2); Mg (1);
  21. 7syw (Na: 1) - Structure of the Wt Ires EIF5B-Containing 48S Initiation Complex, Closed Conformation. Structure 15(Wt)
    Other atoms: Zn (1); Mg (1);
  22. 7sz8 (Na: 2) - Crystal Structure of Human CELSR1 EC4-7
    Other atoms: Mg (1); Ca (16); Cl (1);
  23. 7sz9 (Na: 2) - Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, Fabb, and C16:1-Crypto Acyl Carrier Protein, Acpp
  24. 7szu (Na: 1) - Crystal Structure of Pepper Rna Aptamer in Complex with Hbc Ligand and Fab BL3-6
    Other atoms: Mg (2);
  25. 7t1k (Na: 1) - Crystal Structure of A Superbinder Fes SH2 Domain (SFES1) in Complex with A High Affinity Phosphopeptide
    Other atoms: Cl (2);
  26. 7t1l (Na: 1) - Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide
    Other atoms: Cl (1);
  27. 7t3s (Na: 1) - Crystal Structure of Mouse Cadherin-23 EC8-9
    Other atoms: Ca (3);
  28. 7t78 (Na: 2) - Crystal Structure of Glucokinase (Hexokinase 4) Complexed with Ligand Diethyl ({2-[3-(4-Methanesulfonylpheno Xy)-5-{[(2S)-1-Methoxypropan- 2-Yl]Oxy}Benzamido]-1,3-Thiaz Ol-4-Yl}Methyl)Phosphonate
  29. 7t7h (Na: 2) - Crystal Structure of Vaccinia Virus Decapping Enzyme D9 in Complex with Inhibitor CP100356
  30. 7t7z (Na: 1) - The Crystal Structure of Family 8 Carbohydrate-Binding Module From Dictyostelium Discoideum
  31. 7t84 (Na: 1) - Structure of Angiotensin II Type I Receptor (AT1R) Nanobody Antagonist AT118I4H32 G26D T57I Variant
  32. 7t88 (Na: 1) - Crystal Structure of the C-Terminal Domain of the Phosphate Acetyltransferase From Escherichia Coli
    Other atoms: K (1); Cl (1); I (2);
  33. 7t8d (Na: 1) - Myocilin Olf Mutant V449I
    Other atoms: Ca (1);
  34. 7t9g (Na: 4) - Structure of Vcindy-Na+
  35. 7tb0 (Na: 3) - E. Faecium Muraa in Complex with Fosfomycin and Unag
    Other atoms: K (10); Cl (4);
  36. 7tbg (Na: 1) - ATTPC1 D454N with 1 Mm CA2+
    Other atoms: Ca (4);
  37. 7tc5 (Na: 1) - All Phe-Azurin Variant - F15Y
    Other atoms: Cu (3);
  38. 7tds (Na: 1) - Labrum-Interacting Protein From Saliva Lips-2 (34K-2) From Aedes Albopictus, Native Data
  39. 7tgr (Na: 1) - Structure of Sars-Cov-2 Main Protease in Complex with GC376
    Other atoms: Cl (2); K (1);
  40. 7th5 (Na: 2) - Thermus Thermophilus Methylenetetrahydrofolate Reductase
Page generated: Sat Aug 23 06:31:23 2025

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