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Sodium in PDB 7t1l: Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide

Enzymatic activity of Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide

All present enzymatic activity of Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide, PDB code: 7t1l was solved by G.D.Martyn, A.U.Singer, G.Veggiani, I.Kurinov, F.Sicheri, S.S.Sidhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.32 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.24, 60.66, 61.88, 90, 90, 90
R / Rfree (%) 16.4 / 19.7

Other elements in 7t1l:

The structure of Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide (pdb code 7t1l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide, PDB code: 7t1l:

Sodium binding site 1 out of 1 in 7t1l

Go back to Sodium Binding Sites List in 7t1l
Sodium binding site 1 out of 1 in the Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Superbinder Fes SH2 Domain (Sfess) in Complex with A High Affinity Phosphopeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:21.2
occ:1.00
 O A:LEU55 2.7 13.1 1.0
O A:HOH347 2.8 17.2 1.0
OE1 A:GLN57 2.8 15.6 1.0
O C:HOH104 2.8 14.5 1.0
HG12 C:VAL4 3.1 22.1 1.0
HG3 A:GLN57 3.2 17.7 1.0
O C:PRO3 3.4 17.2 1.0
HB2 A:LEU55 3.5 15.4 1.0
H A:LEU55 3.6 14.5 1.0
CD A:GLN57 3.6 15.7 1.0
HD22 A:LEU65 3.7 19.9 1.0
HA C:VAL4 3.7 19.1 1.0
C A:LEU55 3.7 11.7 1.0
HA A:LEU65 3.8 19.3 1.0
N A:LEU55 3.8 12.1 1.0
CG A:GLN57 3.9 14.8 1.0
HB3 A:PHE54 3.9 15.3 1.0
CG1 C:VAL4 4.0 18.4 1.0
O A:HOH342 4.1 29.4 0.7
CA A:LEU55 4.2 12.3 1.0
HD23 A:LEU65 4.2 19.9 1.0
HD2 A:PHE54 4.3 16.2 1.0
HA A:PHE54 4.3 14.3 1.0
CB A:LEU55 4.3 12.8 1.0
O A:LEU65 4.3 18.1 1.0
O C:HOH103 4.3 17.8 1.0
HG13 C:VAL4 4.3 22.1 1.0
CD2 A:LEU65 4.4 16.6 1.0
H A:GLN57 4.4 16.4 1.0
HB3 A:LEU65 4.5 19.3 1.0
C C:PRO3 4.5 15.6 1.0
C A:PHE54 4.5 13.0 1.0
HG2 A:GLN57 4.5 17.7 1.0
CA C:VAL4 4.5 15.9 1.0
HG11 C:VAL4 4.5 22.1 1.0
HB2 C:GLU2 4.6 16.6 1.0
CA A:LEU65 4.6 16.1 1.0
CA A:PHE54 4.7 11.9 1.0
HB3 A:LEU55 4.7 15.4 1.0
HB2 A:GLN57 4.7 16.7 1.0
CB A:PHE54 4.7 12.7 1.0
CB C:VAL4 4.7 16.7 1.0
HA A:ILE56 4.8 15.1 1.0
HB C:VAL4 4.8 20.1 1.0
O C:GLU2 4.8 14.7 1.0
NE2 A:GLN57 4.8 15.4 1.0
N A:ILE56 4.9 12.2 1.0
N C:VAL4 4.9 17.0 1.0
CB A:GLN57 4.9 13.9 1.0
N A:GLN57 4.9 13.7 1.0
C A:LEU65 5.0 16.0 1.0
CB A:LEU65 5.0 16.1 1.0

Reference:

G.D.Martyn, G.Veggiani, U.Kusebauch, S.R.Morrone, B.P.Yates, A.U.Singer, J.Tong, N.Manczyk, G.Gish, Z.Sun, I.Kurinov, F.Sicheri, M.F.Moran, R.L.Moritz, S.S.Sidhu. Engineered SH2 Domains For Targeted Phosphoproteomics. Acs Chem.Biol. V. 17 1472 2022.
ISSN: ESSN 1554-8937
PubMed: 35613471
DOI: 10.1021/ACSCHEMBIO.2C00051
Page generated: Mon Aug 18 12:02:01 2025

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