Sodium in PDB 7t7z: The Crystal Structure of Family 8 Carbohydrate-Binding Module From Dictyostelium Discoideum

The structure of The Crystal Structure of Family 8 Carbohydrate-Binding Module From Dictyostelium Discoideum, PDB code: 7t7z was solved by M.V.Marcelo, B.M.Campos, F.M.Squina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.62 / 1.46
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.739, 47.27, 79.449, 90, 90, 90
R / Rfree (%)	15.2 / 19.1

The binding sites of Sodium atom in the The Crystal Structure of Family 8 Carbohydrate-Binding Module From Dictyostelium Discoideum (pdb code 7t7z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of Family 8 Carbohydrate-Binding Module From Dictyostelium Discoideum, PDB code: 7t7z:

Sodium binding site 1 out of 1 in the The Crystal Structure of Family 8 Carbohydrate-Binding Module From Dictyostelium Discoideum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Family 8 Carbohydrate-Binding Module From Dictyostelium Discoideum within 5.0Å range: probe atom residue distance (Å) B Occ A:Na802 b:7.9 occ:1.00 O A:VAL585 2.3 8.4 1.0 O A:HOH965 2.5 7.7 1.0 O A:HOH1021 2.5 8.9 1.0 C A:VAL585 3.5 5.9 1.0 N A:VAL585 3.8 4.7 1.0 O A:HOH1000 4.2 12.8 1.0 CA A:VAL585 4.2 6.1 1.0 N A:GLU586 4.4 5.3 1.0 O A:HOH1051 4.4 13.6 1.0 CA A:GLU586 4.6 7.4 1.0 OD1 A:ASN584 4.6 9.6 1.0 C A:GLU586 4.6 8.2 1.0 N A:SER587 4.7 8.3 1.0 CB A:VAL585 4.8 6.7 1.0 C A:ASN584 4.9 6.4 1.0 NE1 A:TRP663 4.9 5.8 1.0

M.V.Liberato, B.M.Campos, G.Tomazetto, L.I.Crouch, W.Garcia, A.C.M.Zeri, D.N.Bolam, F.M.Squina. Unique Properties of A Dictyostelium Discoideum Carbohydrate-Binding Module Expand Our Understanding of Cbm-Ligand Interactions. J.Biol.Chem. V. 298 01891 2022.
ISSN: ESSN 1083-351X
PubMed: 35378128
DOI: 10.1016/J.JBC.2022.101891