Sodium in PDB, part 242 (files: 9641-9680),
PDB 7f4x-7jg4
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9641-9680 (PDB 7f4x-7jg4).
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7f4x (Na: 1) - Joint Neutron and X-Ray Crystal Structure of the Nucleotide-Binding Domain of HSP72 in Complex with Adp
Other atoms:
Mg (1);
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7f5i (Na: 1) - X-Ray Structure of Clostridium Perfringens-Specific Amidase Endolysin
Other atoms:
Zn (1);
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7f6s (Na: 1) - Crystal Structure of Metal-Citrate-Binding Mutant (T199A) Protein (Mcta) of Abc Transporter in Apo State
Other atoms:
Cl (1);
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7f6t (Na: 2) - Crystal Structure of Metal-Citrate-Binding Mutant (Y221F) Protein (Mcta) of Abc Transporter in Apo State
Other atoms:
Cl (1);
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7f6u (Na: 2) - Crystal Structure of Metal-Citrate-Binding Mutant (Y221A) Protein (Mcta) of Abc Transporter in Apo State
Other atoms:
As (1);
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7faz (Na: 1) - Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180
Other atoms:
F (2);
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7fcn (Na: 23) - Crystal Strcture of Pira Insecticidal Protein From Photorhabdus Akhurstii
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7fcr (Na: 2) - Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe)
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7fcs (Na: 3) - Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe)
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7fdn (Na: 1) - Crystal Structure of Transcription Factor Wer in Complex with EGL3
Other atoms:
Cl (3);
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7fe1 (Na: 4) - Crystal Structure of GH92 Alpha-1,2-Mannosidase From Enterococcus Faecalis Atcc 10100 in Complex with Methyl Alpha-1,2-C-Mannobioside
Other atoms:
Ca (4);
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7fe2 (Na: 4) - Crystal Structure of the Mutant E494Q of GH92 Alpha-1,2-Mannosidase From Enterococcus Faecalis Atcc 10100 in Complex with Alpha-1,2- Mannobiose
Other atoms:
Ca (4);
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7fg8 (Na: 1) - H/D Exchanged Hen Egg-White Lysozyme Denatured in Acidic Conditions and Refolded in Solution
Other atoms:
Cl (1);
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7fgu (Na: 1) - H/D Exchanged Hen Egg-White Lysozyme Denatured in Basic Conditions and Refolded in Solution
Other atoms:
Cl (1);
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7fgv (Na: 1) - H/D Exchanged Hen Egg-White Lysozyme Denatured in Heat Condition and Refolded in Solution
Other atoms:
Cl (1);
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7fi3 (Na: 8) - Archaeal Oligopeptide Permease A (Oppa) From Thermococcus Kodakaraensis in Complex with An Endogenous Pentapeptide
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7fjb (Na: 14) - Kpacka (Pduw) with Amppnp, Sodium Acetate Complex Structure
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7gep (Na: 1) - Sulfite Reductase Hemoprotein in Complex with A Partially Oxidized Sulfide Species
Other atoms:
Fe (5);
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7gnm (Na: 1) - Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Nir-Wei-DCC3321B-2 (Mpro-P2761)
Other atoms:
Cl (3);
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7gnp (Na: 1) - Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Nir-Wei-DCC3321B-5 (Mpro-P2889)
Other atoms:
Cl (4);
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7ice (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CACL2
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7icf (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar) (Four-Day Soak)
Other atoms:
Cd (2);
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7icg (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CDCL2
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7ich (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of COCL2
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7ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CRCL3 (0.1 Millimolar)
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7icj (Na: 1) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CUCL2 (0.1 Millimolar)
Other atoms:
Cu (1);
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7ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of MGCL2
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7icl (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar)
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7icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (1.0 Millimolar)
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7icn (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of NICL2
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7ico (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
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7icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of ZNCL2 (0.01 Millimolar)
Other atoms:
Zn (2);
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7icq (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (1);
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7icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
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7ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
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7ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2 and MGCL2
Other atoms:
Zn (1);
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7icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar)
Other atoms:
Cd (1);
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7icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar) and in the Absence of Nacl
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7jg3 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF103 Inhibitor
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7jg4 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF131 Inhibitor
Page generated: Thu Dec 28 11:29:49 2023
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