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Sodium in PDB, part 242 (files: 9641-9680), PDB 7jsj-7kkg

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9641-9680 (PDB 7jsj-7kkg).
  1. 7jsj (Na: 4) - Structure of the Nact-PF2 Complex
  2. 7jsk (Na: 4) - Structure of the Nact-Citrate Complex
  3. 7jtj (Na: 1) - Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase
  4. 7jto (Na: 1) - Crystal Structure of Protac MS33 in Complex with the Wd Repeat- Containing Protein 5 and Pvhl:Elonginc:Elonginb
    Other atoms: F (3);
  5. 7jua (Na: 1) - Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase at 2.35 A Resolution
  6. 7jw9 (Na: 1) - Ternary Cocrystal Structure of Alkanesulfonate Monooxygenase Msud From Pseudomonas Fluorescens
  7. 7jx6 (Na: 4) - Structure of the Sars-Cov-2 ORF8 Encoded Accessory Protein
  8. 7jxa (Na: 3) - Crystal Structure of Native Bovine Arrestin 1 in Complex with Inositol 1,4,5-Triphosphate
  9. 7jxf (Na: 3) - E. Coli Tsase Complex with A Bi-Substrate Reaction Intermediate Diastereomer Analog
  10. 7jxn (Na: 1) - Beta Hairpin Derived From ABETA17-36 with An F20CHA Mutation
    Other atoms: Cl (2);
  11. 7jxx (Na: 3) - Structure of TTBK1 Kinase Domain in Complex with Compound 3
  12. 7jyc (Na: 1) - Crystal Structure of Sars-Cov-2 Main Protease (3CLPRO/Mpro) in Complex with Covalent Inhibitor Narlaprevir
  13. 7jyw (Na: 2) - Crystal Structure of Hla A*2402 in Complex with Tyqwiirnw, An 9-Mer Influenza Epitope
    Other atoms: Ca (1); Ni (1);
  14. 7jyy (Na: 3) - Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).
    Other atoms: Mg (2); Zn (4); Cl (1);
  15. 7jz0 (Na: 4) - Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1) and S-Adenosyl-L-Homocysteine (Sah).
    Other atoms: Zn (4); Cl (7);
  16. 7jz2 (Na: 3) - Succinate: Quinone Oxidoreductase Sqr From E.Coli K12
    Other atoms: Fe (30);
  17. 7k15 (Na: 1) - Crystal Structure of the Human Leukotriene B4 Receptor 1 in Complex with Selective Antagonist Mk-D-046
    Other atoms: F (1);
  18. 7k16 (Na: 1) - Tamana Bat Virus XRRNA1
    Other atoms: Mg (5);
  19. 7k26 (Na: 7) - Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate
    Other atoms: Fe (12);
  20. 7k3v (Na: 80) - Apoferritin Structure at 1.34 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with K3 Detector
    Other atoms: Zn (254);
  21. 7k3w (Na: 112) - Apoferritin Structure at 1.36 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector
    Other atoms: Zn (270);
  22. 7k4o (Na: 1) - Tannin Acyl Hydrolase From Aspergillus Niger
    Other atoms: Cl (2); Ca (1); Zn (4);
  23. 7k5v (Na: 4) - Oxa-48 Bound By Compound 3.1
    Other atoms: Cl (1);
  24. 7k64 (Na: 1) - Binary Titrated Soak Structure of Alkanesulfonate Monooxygenase Msud From Pseudomonas Fluorescens with Fmn
    Other atoms: Cl (1);
  25. 7k88 (Na: 1) - Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether
    Other atoms: Fe (2);
  26. 7k89 (Na: 2) - Crystal Structure of Bovine RPE65 in Complex with 4-Fluoro-Emixustat and Palmitate
    Other atoms: Fe (2); F (2);
  27. 7k96 (Na: 4) - Human Dna Polymerase Beta Ternary Complex with Templating Cytosine and Incoming Deoxyguanosine Diphosphate
    Other atoms: Cl (9); Ca (3);
  28. 7k97 (Na: 2) - Human Dna Polymerase Beta Dgdp Product Complex with MN2+
    Other atoms: Mn (8);
  29. 7kb1 (Na: 1) - Complex of O-Acety-L-Homoserine Aminocarboxypropyltransferase (Mety) From Thermotoga Maritima and A Key Reaction Intermediate
    Other atoms: Mg (1);
  30. 7kbu (Na: 1) - Structure of Hevin Fs-Ec
    Other atoms: Cl (4); Ca (6);
  31. 7kds (Na: 1) - Crystal Structure of Acetyl-Coa Synthetase 2 in Complex with Adenosine-5'-Propylphosphate From Candida Albicans
  32. 7ke1 (Na: 1) - Factor H Enhancing Human Antibody Fragment (Fab) to Meningococcal Factor H Binding Protein
    Other atoms: Cl (1);
  33. 7kgp (Na: 4) - Crystal Structure of Hla-A*0201 in Complex with Sars-Cov-2 N316-324
    Other atoms: Cd (2);
  34. 7kgt (Na: 1) - Crystal Structure of Hla-A*0201 in Complex with Sars-Cov-2 N226-234
    Other atoms: Cd (2);
  35. 7kia (Na: 2) - Crystal Structure of FGFR2 Kinase Domain Gatekeeper Mutant V564F in Complex with Covalent Compound 19
  36. 7kk8 (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81T with Bromide
    Other atoms: Br (2); F (1);
  37. 7kk9 (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81A/T82A with Bromide
    Other atoms: Br (2);
  38. 7kka (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81A with Bromide
    Other atoms: Br (2); F (2);
  39. 7kkb (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81C with Bromide
    Other atoms: Br (2); F (2);
  40. 7kkg (Na: 3) - Dihydrodipicolinate Synthase (Dhdps) From C.Jejuni, N84D Mutant with Pyruvate Bound in the Active Site and L-Lysine Bound at the Allosteric Site
    Other atoms: Mg (21);
Page generated: Sat May 14 05:00:30 2022

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