Sodium in PDB 7fcr: Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe)

The structure of Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe), PDB code: 7fcr was solved by S.Cherakara, A.Kumar, K.Garai, B.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.82 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.642, 53.207, 85.982, 90, 90, 90
R / Rfree (%)	17.1 / 19.4

The binding sites of Sodium atom in the Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe) (pdb code 7fcr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe), PDB code: 7fcr:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:34.8 occ:1.00 OD1 A:ASP35 2.6 19.6 1.0 NH1 A:ARG38 2.9 27.5 1.0 CD A:ARG38 3.3 25.5 1.0 CG A:ASP35 3.5 17.5 1.0 CZ A:ARG38 3.8 25.7 1.0 NE A:ARG38 4.0 31.2 1.0 CA A:ASP35 4.1 14.9 1.0 OD2 A:ASP35 4.3 18.9 1.0 CB A:ASP35 4.3 16.9 1.0 CB A:ARG38 4.3 15.9 1.0 CG A:ARG38 4.3 21.6 1.0 O A:HOH359 4.4 32.3 1.0 O A:HOH346 4.6 20.5 1.0 CD1 A:TRP34 4.7 18.4 1.0 N A:ASP35 4.8 15.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:31.1 occ:1.00 O A:HOH414 2.8 33.9 1.0 O A:SER129 2.9 20.4 1.0 N A:LEU133 3.0 19.0 1.0 N A:GLU132 3.2 23.0 1.0 CA A:THR130 3.3 18.1 1.0 C A:THR130 3.4 17.4 1.0 CB A:GLU132 3.4 30.8 1.0 O A:HOH381 3.5 33.3 1.0 CA A:GLU132 3.6 24.1 1.0 N A:GLU131 3.7 19.9 0.5 SD A:MET125 3.7 37.7 0.2 N A:GLU131 3.7 19.6 0.5 CG A:LEU133 3.7 25.6 1.0 C A:SER129 3.7 18.5 1.0 C A:GLU132 3.7 22.2 1.0 O A:THR130 3.8 18.9 1.0 CB A:LEU133 3.9 20.1 1.0 N A:THR130 3.9 17.7 1.0 CA A:LEU133 4.0 18.6 1.0 C A:GLU131 4.1 21.7 0.5 C A:GLU131 4.1 21.6 0.5 CD1 A:LEU133 4.3 26.1 1.0 CE A:MET125 4.4 33.9 0.8 O A:HOH406 4.5 42.6 1.0 CG A:GLU132 4.5 40.5 1.0 CE A:MET125 4.5 38.2 0.2 CA A:GLU131 4.5 20.7 0.5 CA A:GLU131 4.5 20.8 0.5 CB A:THR130 4.6 18.7 1.0 CD2 A:LEU133 4.9 25.8 1.0 O A:GLU132 4.9 24.8 1.0 OG A:SER129 4.9 21.4 1.0

S.Cherakara, A.Kumar, K.Garai, B.Ghosh. Crystal Structure of the N-Terminal Domain of Mutants of Human Apolipoprotein-E (Apoe) To Be Published.