Sodium in PDB 7fdn: Crystal Structure of Transcription Factor Wer in Complex with EGL3

The structure of Crystal Structure of Transcription Factor Wer in Complex with EGL3, PDB code: 7fdn was solved by Q.Luo, B.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.54 / 1.90
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	70.452, 70.452, 88.556, 90, 90, 120
R / Rfree (%)	18.5 / 22.7

The structure of Crystal Structure of Transcription Factor Wer in Complex with EGL3 also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Sodium atom in the Crystal Structure of Transcription Factor Wer in Complex with EGL3 (pdb code 7fdn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Transcription Factor Wer in Complex with EGL3, PDB code: 7fdn:

Sodium binding site 1 out of 1 in the Crystal Structure of Transcription Factor Wer in Complex with EGL3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Transcription Factor Wer in Complex with EGL3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:11.1 occ:1.00 OG1 A:THR157 3.2 27.5 1.0 N A:ILE132 3.4 17.4 1.0 NE A:ARG158 3.4 16.7 1.0 NH1 A:ARG158 3.5 16.0 1.0 N A:THR157 3.5 21.1 1.0 CD1 A:PHE156 3.5 18.7 1.0 CE1 A:PHE126 3.7 22.5 1.0 CD A:PRO133 3.8 14.5 1.0 CG1 A:ILE132 3.8 25.4 1.0 CA A:GLY131 3.8 22.0 1.0 CZ A:ARG158 3.9 17.3 1.0 CB A:THR157 4.0 23.3 1.0 CE1 A:PHE156 4.0 16.8 1.0 C A:GLY131 4.1 19.8 1.0 CA A:PHE156 4.1 21.1 1.0 CG2 A:THR157 4.1 27.0 1.0 CZ A:PHE126 4.2 20.8 1.0 C A:PHE156 4.2 20.5 1.0 CA A:THR157 4.3 20.4 1.0 N A:ARG158 4.3 17.2 1.0 CA A:ILE132 4.4 17.8 1.0 CB A:ILE132 4.5 21.4 1.0 O A:VAL155 4.6 30.5 1.0 CG A:PHE156 4.6 19.1 1.0 CD A:ARG158 4.6 16.7 1.0 CG A:ARG158 4.6 15.8 1.0 CD1 A:PHE126 4.6 19.1 1.0 C A:THR157 4.7 20.7 1.0 CG2 A:ILE132 4.7 22.7 1.0 CG A:PRO133 4.8 15.6 1.0 CD1 A:ILE132 4.8 29.2 1.0 CB A:ARG158 4.8 15.5 1.0 N A:PRO133 4.9 14.9 1.0 CB A:PHE156 4.9 19.8 1.0

B.Wang, Q.Luo, Y.Li, K.Du, Z.Wu, T.Li, W.H.Shen, C.H.Huang, J.Gan, A.Dong. Structural Insights Into Partner Selection For Myb and Bhlh Transcription Factor Complexes. Nat.Plants V. 8 1108 2021.
ISSN: ESSN 2055-0278
PubMed: 35995835
DOI: 10.1038/S41477-022-01223-W