Atomistry » Sodium » PDB 7f5i-7gry » 7faz
Atomistry »
  Sodium »
    PDB 7f5i-7gry »
      7faz »

Sodium in PDB 7faz: Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180

Enzymatic activity of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180

All present enzymatic activity of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180:
3.4.22.69;

Protein crystallography data

The structure of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180, PDB code: 7faz was solved by R.Zeng, B.X.Quan, X.L.Liu, J.Lei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.614, 97.956, 101.593, 90, 90, 90
R / Rfree (%) 19 / 24.3

Other elements in 7faz:

The structure of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180 also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180 (pdb code 7faz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180, PDB code: 7faz:

Sodium binding site 1 out of 1 in 7faz

Go back to Sodium Binding Sites List in 7faz
Sodium binding site 1 out of 1 in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:62.3
occ:1.00
 O A:HOH665 3.3 55.0 1.0
O A:HOH663 4.2 67.6 1.0
OG1 A:THR26 4.3 42.6 1.0
OE1 A:GLN19 4.5 40.2 1.0
ND2 A:ASN119 4.7 35.4 1.0
O A:HOH523 4.7 41.1 1.0
CG2 A:THR26 4.8 28.8 1.0
NE2 A:GLN19 4.8 41.4 1.0
CB A:THR26 4.9 32.3 1.0
CD A:GLN19 4.9 38.3 1.0

Reference:

R.Zeng, B.X.Quan, X.L.Liu, J.Lei. Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180 To Be Published.
Page generated: Tue Oct 8 16:49:37 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy