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Sodium in PDB 7faz: Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180

Enzymatic activity of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180

All present enzymatic activity of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180:
3.4.22.69;

Protein crystallography data

The structure of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180, PDB code: 7faz was solved by R.Zeng, B.X.Quan, X.L.Liu, J.Lei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.614, 97.956, 101.593, 90, 90, 90
R / Rfree (%) 19 / 24.3

Other elements in 7faz:

The structure of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180 also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180 (pdb code 7faz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180, PDB code: 7faz:

Sodium binding site 1 out of 1 in 7faz

Go back to Sodium Binding Sites List in 7faz
Sodium binding site 1 out of 1 in the Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:62.3
occ:1.00
 O A:HOH665 3.3 55.0 1.0
O A:HOH663 4.2 67.6 1.0
OG1 A:THR26 4.3 42.6 1.0
OE1 A:GLN19 4.5 40.2 1.0
ND2 A:ASN119 4.7 35.4 1.0
O A:HOH523 4.7 41.1 1.0
CG2 A:THR26 4.8 28.8 1.0
NE2 A:GLN19 4.8 41.4 1.0
CB A:THR26 4.9 32.3 1.0
CD A:GLN19 4.9 38.3 1.0

Reference:

R.Zeng, B.X.Quan, X.L.Liu, J.Lei. Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180 To Be Published.
Page generated: Tue Oct 8 16:49:37 2024

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