Sodium in PDB, part 240 (files: 9561-9600),
PDB 7ev7-7jsk
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9561-9600 (PDB 7ev7-7jsk).
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7ev7 (Na: 4) - Bovine Heart Cytochrome C Oxidase in the Carbon Monoxide-Bound Fully Reduced State at A 50 K
Other atoms:
Zn (2);
Mg (2);
Fe (4);
Cu (6);
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7evx (Na: 2) - Crystal Structures of Na+,K+-Atpase in Complex with Istaroxime
Other atoms:
Mg (4);
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7faz (Na: 1) - Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180
Other atoms:
F (2);
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7gep (Na: 1) - Sulfite Reductase Hemoprotein in Complex with A Partially Oxidized Sulfide Species
Other atoms:
Fe (5);
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7ice (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CACL2
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7icf (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar) (Four-Day Soak)
Other atoms:
Cd (2);
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7icg (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CDCL2
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7ich (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of COCL2
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7ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CRCL3 (0.1 Millimolar)
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7icj (Na: 1) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CUCL2 (0.1 Millimolar)
Other atoms:
Cu (1);
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7ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of MGCL2
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7icl (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar)
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7icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (1.0 Millimolar)
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7icn (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of NICL2
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7ico (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
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7icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of ZNCL2 (0.01 Millimolar)
Other atoms:
Zn (2);
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7icq (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (1);
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7icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
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7ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
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7ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2 and MGCL2
Other atoms:
Zn (1);
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7icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar)
Other atoms:
Cd (1);
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7icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar) and in the Absence of Nacl
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7jg3 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF103 Inhibitor
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7jg4 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF131 Inhibitor
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7jgk (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K
Other atoms:
Ni (3);
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7jgo (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K
Other atoms:
Ni (3);
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7jgp (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate at 318K
Other atoms:
Ni (3);
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7jgq (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K After One Heating/Cooling Cycle
Other atoms:
Ni (3);
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7jhk (Na: 1) - Structure of Human Beta 1,3-N-Acetylglucosaminyltransferase 2 in Unliganded Form
Other atoms:
Cl (6);
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7jja (Na: 2) - Crystal Structure of the Zint-Like Domain of Streptococcus Pneumoniae Adca in the Apo Form
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7jjb (Na: 6) - Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca
Other atoms:
Mg (1);
Zn (2);
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7jky (Na: 1) - Bromodomain-Containing Protein 4 (BRD4) Bromodomain 1 (BD1) Complexed with YF3-126
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7jlk (Na: 17) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV1 Scfv
Other atoms:
Cl (14);
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7jln (Na: 1) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV9 Fab
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7jmq (Na: 1) - The External Aldimine Form of the Mutant Beta-S377A Salmonella Thypi Tryptophan Synthase in Open Conformation Showing Dual Side Chain Conformations For the Residue Beta-Q114, Sodium Ion at the Metal Coordination Site, and F9 Inhibitor at the Alpha-Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring
Other atoms:
Cs (2);
Cl (1);
F (3);
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7jr1 (Na: 4) - Crystal Structure of the R64F Mutant of Bauhinia Bauhinioides Kallikrein Inhibitor Complexed with Bovine Trypsin
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7jr6 (Na: 2) - H-Pdgs Complexed with A 2-Phenylimidazo[1,2-A]Pyridine-6-Carboxamide Inhibitors
Other atoms:
Mg (2);
F (2);
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7jr8 (Na: 3) - H-Pdgs Complexed with A 2-Phenylimidazo[1,2-A]Pyridine-6-Carboxamide Inhibitors
Other atoms:
Mg (2);
Cl (1);
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7jsj (Na: 4) - Structure of the Nact-PF2 Complex
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7jsk (Na: 4) - Structure of the Nact-Citrate Complex
Page generated: Sat Sep 25 14:52:57 2021
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