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Sodium in PDB 7dln: Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography

Enzymatic activity of Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography

All present enzymatic activity of Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography:
3.2.1.17;

Protein crystallography data

The structure of Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography, PDB code: 7dln was solved by F.Z.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.24 / 2.15
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79, 79, 38, 90, 90, 90
R / Rfree (%) 18.7 / 20

Other elements in 7dln:

The structure of Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography (pdb code 7dln). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography, PDB code: 7dln:

Sodium binding site 1 out of 1 in 7dln

Go back to Sodium Binding Sites List in 7dln
Sodium binding site 1 out of 1 in the Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Lysozyme Obtained on Ssrf Using Serial Synchrotron Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:116.0
occ:1.00
O A:ARG73 2.2 92.1 1.0
O A:SER60 2.4 78.0 1.0
OG A:SER72 2.5 94.7 1.0
CB A:SER72 2.5 88.5 1.0
O A:CYS64 2.9 74.7 1.0
O A:HOH333 3.1 81.3 1.0
C A:ARG73 3.2 87.8 1.0
N A:ARG73 3.4 86.0 1.0
C A:SER72 3.5 91.1 1.0
C A:SER60 3.5 74.1 1.0
CA A:SER72 3.5 90.5 1.0
O A:ARG61 3.7 83.8 1.0
C A:CYS64 3.8 77.0 1.0
C A:ARG61 3.8 80.6 1.0
CA A:ARG73 3.9 88.4 1.0
O A:SER72 4.1 89.2 1.0
CA A:ARG61 4.1 83.6 1.0
N A:ASN74 4.1 84.7 1.0
N A:ARG61 4.3 77.8 1.0
N A:TRP62 4.3 77.6 1.0
CA A:ASN74 4.3 81.8 1.0
CA A:ASN65 4.4 77.5 1.0
N A:CYS64 4.4 71.9 1.0
N A:ASN65 4.4 74.7 1.0
CA A:SER60 4.5 72.7 1.0
C A:TRP62 4.7 77.8 1.0
CA A:CYS64 4.7 76.3 1.0
CB A:ASN74 4.7 77.8 1.0
N A:TRP63 4.7 75.1 1.0
N A:SER72 4.8 90.9 1.0
CA A:TRP62 4.8 78.5 1.0

Reference:

F.Z.Zhao, F.Z.Zhao. N/A N/A.
Page generated: Fri Dec 17 11:18:04 2021

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