Sodium in PDB 7dj2: Crystal Structure of the G26C/E290S Mutant of Leut

The structure of Crystal Structure of the G26C/E290S Mutant of Leut, PDB code: 7dj2 was solved by J.Fan, Y.Xiao, Z.Sun, X.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.33 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	82.327, 110.707, 87.135, 90, 96, 90
R / Rfree (%)	21.2 / 23.8

The binding sites of Sodium atom in the Crystal Structure of the G26C/E290S Mutant of Leut (pdb code 7dj2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the G26C/E290S Mutant of Leut, PDB code: 7dj2:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the G26C/E290S Mutant of Leut


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the G26C/E290S Mutant of Leut within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:30.1 occ:1.00 O A:GLY20 2.2 36.4 1.0 O A:ALA351 2.3 34.0 1.0 O A:VAL23 2.3 35.0 1.0 OG1 A:THR354 2.3 33.3 1.0 OG A:SER355 2.5 29.4 1.0 N A:SER355 3.0 30.4 1.0 C A:VAL23 3.2 34.6 1.0 CB A:THR354 3.3 32.2 1.0 CB A:SER355 3.3 30.0 1.0 C A:ALA351 3.3 32.4 1.0 C A:GLY20 3.3 35.4 1.0 C A:THR354 3.3 30.3 1.0 CA A:SER355 3.6 30.8 1.0 CA A:GLY24 3.6 35.8 1.0 N A:GLY24 3.8 35.1 1.0 CA A:THR354 3.8 30.7 1.0 CA A:ALA351 3.8 32.3 1.0 CA A:GLY20 3.9 33.3 1.0 O A:THR354 4.0 30.7 1.0 N A:THR354 4.1 30.4 1.0 CA A:VAL23 4.3 34.1 1.0 N A:VAL23 4.3 31.6 1.0 O A:ASN21 4.4 28.7 1.0 O A:PHE350 4.4 31.8 1.0 N A:ASN21 4.5 35.1 1.0 N A:GLY352 4.5 30.9 1.0 C A:ASN21 4.5 31.2 1.0 CB A:ALA351 4.6 30.7 1.0 CG2 A:THR354 4.6 32.4 1.0 CA A:ASN21 4.8 33.4 1.0 CB A:VAL23 4.8 35.2 1.0 C A:GLY352 4.8 30.8 1.0 O A:GLY352 4.8 30.7 1.0 C A:ALA22 4.9 31.7 1.0 CA A:GLY352 4.9 30.3 1.0 C A:GLY24 5.0 36.9 1.0 N A:ALA351 5.0 31.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the G26C/E290S Mutant of Leut


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the G26C/E290S Mutant of Leut within 5.0Å range: probe atom residue distance (Å) B Occ B:Na602 b:31.3 occ:1.00 O B:GLY20 2.2 37.2 1.0 O B:ALA351 2.3 31.3 1.0 O B:VAL23 2.3 37.4 1.0 OG1 B:THR354 2.3 32.4 1.0 OG B:SER355 2.5 30.1 1.0 N B:SER355 3.1 32.2 1.0 C B:VAL23 3.2 37.3 1.0 C B:ALA351 3.3 32.4 1.0 C B:GLY20 3.4 35.9 1.0 CB B:SER355 3.4 30.4 1.0 CB B:THR354 3.4 32.7 1.0 C B:THR354 3.4 32.7 1.0 CA B:GLY24 3.6 37.3 1.0 CA B:SER355 3.7 31.8 1.0 CA B:ALA351 3.7 32.3 1.0 N B:GLY24 3.8 37.5 1.0 CA B:THR354 3.8 33.1 1.0 CA B:GLY20 3.9 34.1 1.0 O B:THR354 4.1 32.0 1.0 N B:THR354 4.1 33.4 1.0 CA B:VAL23 4.3 36.8 1.0 O B:PHE350 4.3 36.2 1.0 N B:VAL23 4.3 35.3 1.0 N B:GLY352 4.5 32.8 1.0 O B:ASN21 4.5 35.1 1.0 N B:ASN21 4.5 35.8 1.0 CB B:ALA351 4.5 31.1 1.0 C B:ASN21 4.6 34.6 1.0 CG2 B:THR354 4.7 32.5 1.0 CB B:VAL23 4.8 37.3 1.0 C B:GLY352 4.8 32.1 1.0 CA B:ASN21 4.8 34.8 1.0 CA B:GLY352 4.8 31.9 1.0 O B:GLY352 4.9 31.9 1.0 N B:ALA351 4.9 33.5 1.0 C B:ALA22 4.9 34.4 1.0 C B:GLY24 4.9 38.6 1.0 O B:ALA19 5.0 35.6 1.0

J.Fan, Y.Xiao, M.Quick, Y.Yang, Z.Sun, J.A.Javitch, X.Zhou. Crystal Structures of Leut Reveal Conformational Dynamics in the Outward-Facing States J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X