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Sodium in PDB, part 230 (files: 9161-9200), PDB 6xxq-6yc2

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9161-9200 (PDB 6xxq-6yc2).
  1. 6xxq (Na: 2) - Crystal Structure of Spectinomycin Adenyltransferase Aad(9) From Enterococcus Faecialis with Atp and Spectinomycin
    Other atoms: Mg (3);
  2. 6xya (Na: 1) - Cap-Binding Domain of Sftsv L Protein
  3. 6xyd (Na: 1) - Crystal Structure of Q4D6Q6, A Conserved Kinetoplastid-Specific Protein From Trypanosoma Cruzi
    Other atoms: Mg (2); Cl (3);
  4. 6xyf (Na: 1) - Nanobody 22
  5. 6xyt (Na: 10) - Crystal Structure of the O-State of the Light-Driven Sodium Pump KR2 in the Pentameric Form, pH 8.0
  6. 6xyx (Na: 2) - Crystal Structure of the BCL6 Btb Domain in Complex with the NCOR1 Bbd Corepressor Peptide
  7. 6xzz (Na: 7) - Crystal Structure of the BCL6 Btb Domain in Complex with the NCOR1 BBD2 Peptide
    Other atoms: F (3); Cl (2);
  8. 6y02 (Na: 2) - Thrombin in Complex with 13K
    Other atoms: Br (1);
  9. 6y0y (Na: 1) - Sarcin Ricin Loop, Mutant C2666U
    Other atoms: Mg (1);
  10. 6y17 (Na: 1) - Crystal Structure of An NCOR1BBD2-BCL6BTB Chimera in Complex with NEBULINSH3-NCOR1BBD1
  11. 6y3e (Na: 3) - Scaffold-Ligand Complex with Ligand Unmodelled
  12. 6y45 (Na: 1) - Crystal Structure of the H33A Variant of Rsrr
    Other atoms: Fe (8);
  13. 6y5m (Na: 4) - Crystal Structure of Mouse Autotaxin in Complex with Compound 1A
    Other atoms: F (1); Zn (2); Cl (3);
  14. 6y5s (Na: 1) - Crystal Structure of Savinase at Cryogenic Conditions
    Other atoms: Ca (1);
  15. 6y5t (Na: 1) - Crystal Structure of Savinase at Room Temperature
    Other atoms: Ca (1);
  16. 6y6y (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H129A
    Other atoms: Ca (1); Zn (1); Cu (4); Cl (2);
  17. 6y71 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H130A
    Other atoms: Ca (2); Cl (2); Cu (4);
  18. 6y72 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H178A
    Other atoms: Cl (1); Cu (4); K (1); Ca (2);
  19. 6y76 (Na: 3) - AP01 - A Redesigned Transferrin Receptor Apical Domain
  20. 6y77 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H326A
    Other atoms: Cu (4); Zn (2);
  21. 6y7d (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H433A
    Other atoms: Ca (1); Cl (2); Cu (4);
  22. 6y7e (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H494A
    Other atoms: Ca (1); Zn (3); Cl (2); Cu (4);
  23. 6y7k (Na: 2) - Structure of the BRD9 Bromodomain and Compound 27
  24. 6y7t (Na: 5) - Engineered Conjugation of Lysine-Specific Molecular Tweezers with Exos Derived Peptidic Inhibitor Enhance Affinity Towards Target Protein 14-3-3 Through Ditopic Binding
  25. 6y8o (Na: 5) - Mycobacterium Smegmatis Gyrb 22KDA Atpase Sub-Domain in Complex with Novobiocin
  26. 6y8y (Na: 5) - Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5) with Bound Glucose-1-Phosphate
    Other atoms: Ni (1); Ca (1);
  27. 6y8z (Na: 4) - Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5)
    Other atoms: Ni (1); Ca (1);
  28. 6y9h (Na: 2) - Thrombin in Complex with D-Phe-Pro-M-Trifluoromethylbenzylamide Derivative (PHE2)
    Other atoms: F (6);
  29. 6y9j (Na: 1) - Crystal Structure of Subtype-Switched Epithelial Adhesin 1 to 9 A Domain (EPA1-CBL2EPA9) From Candida Glabrata in Complex with Beta- Lactose
    Other atoms: Ca (1); Cl (2);
  30. 6yb6 (Na: 2) - Thrombin in Complex with D-Phe-Pro-3-Chloro-1,3-Dihydroxybenzylamide Derivative (13C)
    Other atoms: Cl (1);
  31. 6ybf (Na: 1) - Rt Structure of Hew Lysozyme Obtained at 1.13 A Resolution From Crystal Grown in A Kapton Microchip.
    Other atoms: Cl (1);
  32. 6ybi (Na: 1) - Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip.
    Other atoms: Cl (2);
  33. 6ybo (Na: 1) - Rt Structure of Glucose Isomerase Obtained at 1.06 A Resolution From Crystal Grown in A Kapton Microchip.
    Other atoms: Mg (2);
  34. 6ybr (Na: 2) - Rt Structure of Glucose Isomerase Obtained at 1.20 A Resolution From Crystal Grown in A Mylar Microchip.
    Other atoms: Mg (2);
  35. 6ybx (Na: 1) - Rt Structure of Thaumatin Obtained at 1.14 A Resolution From Crystal Grown in A Mylar Microchip.
  36. 6yby (Na: 1) - Crystal Structure of the D116N Mutant of the Light-Driven Sodium Pump KR2 in the Monomeric Form, pH 4.6
  37. 6ybz (Na: 5) - Crystal Structure of the D116N Mutant of the Light-Driven Sodium Pump KR2 in the Pentameric Form, pH 8.0
  38. 6yc0 (Na: 10) - Crystal Structure of the Steady-State-Smx Activated State of the Light-Driven Sodium Pump KR2 in the Pentameric Form at Room Temperature, pH 8.0
  39. 6yc1 (Na: 5) - Crystal Structure of the H30A Mutant of the Light-Driven Sodium Pump KR2 in the Pentameric Form, pH 8.0
  40. 6yc2 (Na: 5) - Crystal Structure of the Light-Driven Sodium Pump KR2 in the Pentameric Form at Room Temperature, pH 8.0
Page generated: Fri Dec 24 09:54:51 2021

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