Atomistry » Sodium » PDB 6xyt-6ycq » 6y0y
Atomistry »
  Sodium »
    PDB 6xyt-6ycq »
      6y0y »

Sodium in PDB 6y0y: Sarcin Ricin Loop, Mutant C2666U

Protein crystallography data

The structure of Sarcin Ricin Loop, Mutant C2666U, PDB code: 6y0y was solved by E.Ennifar, E.Westhof, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.28 / 0.95
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 22.48, 27.55, 29.69, 91.58, 93.61, 108.31
R / Rfree (%) 12.5 / 13.9

Other elements in 6y0y:

The structure of Sarcin Ricin Loop, Mutant C2666U also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Sarcin Ricin Loop, Mutant C2666U (pdb code 6y0y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sarcin Ricin Loop, Mutant C2666U, PDB code: 6y0y:

Sodium binding site 1 out of 1 in 6y0y

Go back to Sodium Binding Sites List in 6y0y
Sodium binding site 1 out of 1 in the Sarcin Ricin Loop, Mutant C2666U


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sarcin Ricin Loop, Mutant C2666U within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na2702

b:18.2
occ:1.00
O A:HOH2929 2.4 27.8 1.0
O A:HOH2927 2.4 24.2 1.0
O A:HOH2867 2.5 15.0 1.0
O4 A:U2672 2.6 8.8 1.0
O6 A:G2673 2.7 10.0 1.0
C4 A:U2672 3.5 7.5 1.0
C6 A:G2673 3.6 9.2 1.0
N7 A:G2673 3.9 9.1 1.0
H5 A:U2672 4.0 9.3 1.0
C5 A:G2673 4.1 8.8 1.0
O A:HOH2859 4.1 20.7 1.0
C5 A:U2672 4.1 7.7 1.0
O A:HOH2885 4.4 27.9 1.0
O A:HOH2811 4.4 21.1 1.0
N3 A:U2672 4.4 7.3 1.0
H3 A:U2672 4.4 8.8 1.0
N1 A:G2673 4.8 10.2 1.0
O A:HOH2887 4.9 14.9 1.0
H1 A:G2673 5.0 12.3 0.0

Reference:

E.Ennifar, E.Westhof. Sarcin Ricin Loop, Mutant C2666U To Be Published.
Page generated: Tue Oct 8 14:56:42 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy