Sodium in PDB 6yc5: Rt Structure of Thaumatin Obtained at 1.35 A Resolution From Crystal Grown in A Kapton Microchip.

The structure of Rt Structure of Thaumatin Obtained at 1.35 A Resolution From Crystal Grown in A Kapton Microchip., PDB code: 6yc5 was solved by J.A.Gavira, S.Martinez-Rodriguez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.48 / 1.35
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	58.390, 58.390, 151.447, 90.00, 90.00, 90.00
R / Rfree (%)	12.7 / 14.8

The binding sites of Sodium atom in the Rt Structure of Thaumatin Obtained at 1.35 A Resolution From Crystal Grown in A Kapton Microchip. (pdb code 6yc5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Rt Structure of Thaumatin Obtained at 1.35 A Resolution From Crystal Grown in A Kapton Microchip., PDB code: 6yc5:

Sodium binding site 1 out of 1 in the Rt Structure of Thaumatin Obtained at 1.35 A Resolution From Crystal Grown in A Kapton Microchip.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Rt Structure of Thaumatin Obtained at 1.35 A Resolution From Crystal Grown in A Kapton Microchip. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:24.6 occ:1.00 O A:THR85 2.8 17.6 1.0 N A:LYS106 2.8 15.6 1.0 O A:SER103 2.8 16.5 1.0 O A:GLY107 3.1 18.7 1.0 CA A:LYS106 3.3 16.0 1.0 C A:ASN104 3.3 15.7 1.0 N A:ILE105 3.3 16.2 1.0 C A:LYS106 3.4 15.9 1.0 CA A:ASN104 3.4 15.8 1.0 C A:SER103 3.4 15.8 1.0 CB A:LYS106 3.4 18.8 1.0 N A:GLY107 3.5 16.0 1.0 CD1 A:LEU87 3.6 20.8 1.0 CG A:LEU87 3.7 16.9 1.0 N A:ASN104 3.7 15.4 1.0 C A:ILE105 3.9 15.9 1.0 C A:THR85 3.9 15.7 1.0 O A:ASN104 4.0 16.4 1.0 O A:LYS106 4.0 18.2 1.0 OG A:SER103 4.0 19.1 1.0 N A:LEU87 4.0 15.5 1.0 C A:GLY107 4.1 16.8 1.0 CB A:LEU87 4.1 16.4 1.0 CA A:ILE105 4.1 16.2 1.0 CA A:THR86 4.3 15.1 1.0 CG A:LYS106 4.3 24.6 1.0 CB A:SER103 4.4 16.9 1.0 CA A:GLY107 4.4 16.0 1.0 C A:THR86 4.5 14.7 1.0 CA A:SER103 4.5 15.4 1.0 OG1 A:THR85 4.6 19.6 1.0 N A:THR86 4.6 15.1 1.0 CA A:LEU87 4.7 15.7 1.0 CB A:ASN104 4.8 16.9 1.0 CB A:ILE105 4.9 18.0 1.0 ND2 A:ASN104 5.0 18.7 1.0 O A:ILE105 5.0 17.9 1.0

J.A.Gavira, I.Rodriguez-Ruiz, S.Martinez-Rodriguez, S.Basu, S.Teychene, A.A.Mccarthy, C.Mueller-Dieckman. Attaining Atomic Resolution From in Situ Data Collection at Room Temperature Using Counter-Diffusion-Based Low-Cost Microchips. Acta Crystallogr D Struct V. 76 751 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32744257
DOI: 10.1107/S2059798320008475