Sodium in PDB 6ybx: Rt Structure of Thaumatin Obtained at 1.14 A Resolution From Crystal Grown in A Mylar Microchip.

The structure of Rt Structure of Thaumatin Obtained at 1.14 A Resolution From Crystal Grown in A Mylar Microchip., PDB code: 6ybx was solved by J.A.Gavira, S.Martinez-Rodriguez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.34 / 1.14
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	58.570, 58.570, 151.520, 90.00, 90.00, 90.00
R / Rfree (%)	13.5 / 15.7

The binding sites of Sodium atom in the Rt Structure of Thaumatin Obtained at 1.14 A Resolution From Crystal Grown in A Mylar Microchip. (pdb code 6ybx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Rt Structure of Thaumatin Obtained at 1.14 A Resolution From Crystal Grown in A Mylar Microchip., PDB code: 6ybx:

Sodium binding site 1 out of 1 in the Rt Structure of Thaumatin Obtained at 1.14 A Resolution From Crystal Grown in A Mylar Microchip.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Rt Structure of Thaumatin Obtained at 1.14 A Resolution From Crystal Grown in A Mylar Microchip. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:19.8 occ:1.00 O A:SER103 2.8 13.4 1.0 N A:LYS106 2.8 12.8 1.0 O A:THR85 2.8 14.1 1.0 O A:GLY107 3.1 15.5 1.0 N A:ILE105 3.3 12.9 1.0 C A:ASN104 3.3 12.8 1.0 CA A:LYS106 3.3 13.0 1.0 CA A:ASN104 3.3 12.8 1.0 C A:LYS106 3.4 12.7 1.0 C A:SER103 3.4 12.9 1.0 CB A:LYS106 3.4 15.3 1.0 N A:GLY107 3.5 13.1 1.0 CD1 A:LEU87 3.7 17.6 1.0 N A:ASN104 3.7 12.4 1.0 CG A:LEU87 3.7 14.8 1.0 C A:ILE105 3.9 13.1 1.0 C A:THR85 4.0 12.5 1.0 O A:ASN104 4.0 13.3 1.0 OG A:SER103 4.0 16.1 1.0 O A:LYS106 4.0 15.0 1.0 N A:LEU87 4.0 12.4 1.0 C A:GLY107 4.1 13.3 1.0 CA A:ILE105 4.1 13.1 1.0 CB A:LEU87 4.2 14.3 1.0 CG A:LYS106 4.3 19.4 1.0 CA A:THR86 4.3 11.6 1.0 CB A:SER103 4.4 14.4 1.0 CA A:GLY107 4.4 14.2 1.0 C A:THR86 4.5 12.1 1.0 CA A:SER103 4.5 12.6 1.0 OG1 A:THR85 4.6 16.1 1.0 N A:THR86 4.6 12.1 1.0 CB A:ASN104 4.8 13.9 1.0 CA A:LEU87 4.8 12.3 1.0 CB A:ILE105 4.9 13.8 1.0 ND2 A:ASN104 4.9 16.5 1.0 O A:ILE105 5.0 14.6 1.0

J.A.Gavira, I.Rodriguez-Ruiz, S.Martinez-Rodriguez, S.Basu, S.Teychene, A.A.Mccarthy, C.Mueller-Dieckman. Attaining Atomic Resolution From in Situ Data Collection at Room Temperature Using Counter-Diffusion-Based Low-Cost Microchips. Acta Crystallogr D Struct V. 76 751 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32744257
DOI: 10.1107/S2059798320008475