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Sodium in PDB, part 223 (files: 8881-8920), PDB 6tod-6u3a

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 8881-8920 (PDB 6tod-6u3a).
  1. 6tod (Na: 2) - Crystal Structure of the Orexin-1 Receptor in Complex with Empa
  2. 6top (Na: 4) - Structure of the Pore C-Terminal Domain, A Protein of T9SS From Porphyromonas Gingivalis
  3. 6tos (Na: 1) - Crystal Structure of the Orexin-1 Receptor in Complex with GSK1059865
    Other atoms: F (2); Br (2);
  4. 6toy (Na: 2) - Crystal Structure of Bacillus Paralicheniformis Wild-Type Alpha- Amylase
    Other atoms: Ca (2);
  5. 6toz (Na: 2) - Crystal Structure of Bacillus Paralicheniformis Alpha-Amylase in Complex with Acarbose
    Other atoms: Ca (2);
  6. 6tp0 (Na: 2) - Crystal Structure of Bacillus Paralicheniformis Alpha-Amylase in Complex with Maltose
    Other atoms: Ca (2);
  7. 6tp1 (Na: 2) - Crystal Structure of Bacillus Paralicheniformis Alpha-Amylase in Complex with Maltotetraose
    Other atoms: Ca (2);
  8. 6tp2 (Na: 2) - Crystal Structure of Bacillus Paralicheniformis Alpha-Amylase in Complex with Beta-Cyclodextrin
    Other atoms: Ca (2);
  9. 6tq4 (Na: 1) - Crystal Structure of the Orexin-1 Receptor in Complex with Compound 16
  10. 6tqb (Na: 2) - X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif
    Other atoms: Mg (1); Cl (4);
  11. 6tqd (Na: 2) - D00-D0 Domain of Intimin
    Other atoms: Br (9); Cl (6);
  12. 6tqp (Na: 1) - Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis
  13. 6tqq (Na: 1) - Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis
  14. 6tr1 (Na: 5) - Native Cytochrome C6 From Thermosynechococcus Elongatus in Space Group H3
    Other atoms: Fe (3);
  15. 6trr (Na: 2) - Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis
  16. 6trw (Na: 3) - Crystal Structure of DPP8 in Complex with the Eil Peptide (Slrflfegqriadnh)
  17. 6trx (Na: 3) - Crystal Structure of DPP8 in Complex with 1G244
    Other atoms: F (6);
  18. 6ts4 (Na: 1) - Coagulation Factor XI Protease Domain in Complex with Active Site Inhibitor
  19. 6ttk (Na: 4) - Crystal Structure of the Kelch Domain of Human KLHL12 in Complex with DVL1 Peptide
    Other atoms: Cl (1);
  20. 6ttn (Na: 1) - N-Terminally Truncated Hyoscyamine 6-Hydroxylase (TH6H) in Complex with N-Oxalylglycine and Hyoscyamine
    Other atoms: Ni (1); Sr (1);
  21. 6tto (Na: 1) - N-Terminally Truncated Hyoscyamine 6-Hydroxylase (TH6H) in Complex with 2-Oxoglutarate
    Other atoms: Ni (1); Sr (2);
  22. 6tv7 (Na: 5) - Crystal Structure of Rsgcamp in the Off State (Illuminated)
    Other atoms: Ca (4);
  23. 6tvg (Na: 1) - Human CD73 (Ecto 5'-Nucleotidase) in Complex with Ampcp in the Open State
    Other atoms: Zn (2); Ca (1);
  24. 6tvl (Na: 1) - Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound
    Other atoms: F (3); Ru (1); Cl (1);
  25. 6tvp (Na: 2) - Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm
  26. 6tvy (Na: 1) - Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device
    Other atoms: Tb (3); Cl (2);
  27. 6tww (Na: 1) - Variant W229D/F290W-19 of the Last Common Ancestor of Gram-Negative Bacteria Beta-Lactamase Class A (GNCA4)
    Other atoms: Mg (1);
  28. 6tx2 (Na: 1) - Human HPF1
  29. 6tx4 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with 2-Pyridone
    Other atoms: Cl (1);
  30. 6tx5 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with 4-Methylimidazole
  31. 6tx6 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with Nicotinamide
    Other atoms: Cl (1);
  32. 6tx7 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with 2-Piperidone
    Other atoms: Cl (1);
  33. 6tx8 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with Imidazole
    Other atoms: Cl (1);
  34. 6tx9 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with Hydantoin
  35. 6txb (Na: 4) - Crystal Structure of MINDY1 Mutant (P138A) in Complex with LYS48 Linked Di-Ubiquitin
    Other atoms: Cl (2);
  36. 6txd (Na: 1) - Variant W229D/F290W-12 of the Last Common Ancestor of Gram-Negative Bacteria Beta-Lactamase Class A (GNCA4)
  37. 6txg (Na: 1) - Proteinase K in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound
    Other atoms: F (3); Ru (2); Ca (1);
  38. 6ty6 (Na: 1) - Variant W229D/F290W-2 of the Last Common Ancestor of Gram-Negative Bacteria Beta-Lactamase Class A (GNCA4) Bound to 5(6)- Nitrobenzotriazole (Ts-Analog)
  39. 6u2o (Na: 2) - Structure of Human Dna Polymerase Beta Misinserting Dampnpp Opposite the 5'G of the Cisplatin Pt-Gg Intrastrand Crosslink
    Other atoms: Mg (1); Pt (1);
  40. 6u3a (Na: 2) - 1.65 Angstrom Crystal Structure of the N97S Ca-Cam:CAV1.2 Iq Domain Complex
    Other atoms: Ca (7);
Page generated: Fri Dec 24 09:54:19 2021

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