Sodium in PDB 6tvp: Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm

All present enzymatic activity of Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm:
2.4.1.342;

The structure of Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm, PDB code: 6tvp was solved by K.Syson, C.E.M.Stevenson, D.M.Lawson, S.Bornemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	72.46 / 1.90
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	135.371, 144.928, 46.468, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 21.2

The binding sites of Sodium atom in the Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm (pdb code 6tvp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm, PDB code: 6tvp:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm within 5.0Å range: probe atom residue distance (Å) B Occ A:Na500 b:38.2 occ:1.00 O A:HOH818 2.1 37.6 1.0 O A:ALA279 2.4 31.9 1.0 O A:SER277 2.4 34.8 1.0 OG1 A:THR303 2.5 31.2 1.0 O A:HOH656 2.5 34.6 1.0 C A:SER277 3.4 34.0 1.0 CB A:THR303 3.6 31.1 1.0 C A:ALA279 3.6 31.2 1.0 O A:LEU276 3.6 30.6 1.0 CG2 A:THR303 3.9 29.8 1.0 CA A:THR303 4.0 29.4 1.0 O A:ALA302 4.0 31.9 1.0 CA A:SER277 4.0 33.9 1.0 N A:ALA279 4.1 33.9 1.0 C A:ALA278 4.2 34.5 1.0 N A:ALA278 4.4 35.9 1.0 O A:HOH680 4.4 33.3 1.0 CA A:ALA279 4.4 31.3 1.0 C A:ALA302 4.4 31.2 1.0 O A:CYS301 4.5 33.0 1.0 N A:THR303 4.5 29.7 1.0 O A:ALA278 4.5 35.1 1.0 N A:THR280 4.6 31.3 1.0 C A:LEU276 4.6 31.2 1.0 CA A:ALA278 4.7 35.0 1.0 CA A:THR280 4.8 33.3 1.0 N A:SER277 4.8 31.7 1.0 CB A:ALA279 5.0 31.2 1.0

Sodium binding site 2 out of 2 in the Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm within 5.0Å range: probe atom residue distance (Å) B Occ B:Na500 b:54.9 occ:1.00 O B:SER277 2.5 56.5 1.0 O B:ALA279 2.6 52.5 1.0 OG1 B:THR303 2.7 49.5 1.0 C B:SER277 3.6 57.0 1.0 CB B:THR303 3.7 45.9 1.0 C B:ALA279 3.9 52.5 1.0 O B:ALA302 3.9 47.7 1.0 CA B:THR303 4.0 45.3 1.0 CG2 B:THR303 4.0 45.2 1.0 O B:HOH601 4.0 52.4 1.0 O B:LEU276 4.2 49.9 1.0 C B:ALA278 4.3 58.2 1.0 N B:ALA279 4.3 55.6 1.0 C B:ALA302 4.4 46.3 1.0 O B:ALA278 4.4 58.4 1.0 CA B:SER277 4.4 56.5 1.0 O B:CYS301 4.5 51.5 1.0 N B:THR303 4.5 45.7 1.0 N B:ALA278 4.5 58.9 1.0 CA B:ALA279 4.7 54.5 1.0 CA B:ALA278 4.8 59.8 1.0 N B:THR280 4.8 52.3 1.0 CA B:THR280 4.9 52.3 1.0

K.Syson, C.E.M.Stevenson, D.M.Lawson, S.Bornemann. Structure of the Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm. Acta Crystallogr.,Sect.F V. 76 175 2020.
ISSN: ESSN 2053-230X
PubMed: 32254051
DOI: 10.1107/S2053230X20004343