Sodium in PDB 6trr: Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis

The structure of Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis, PDB code: 6trr was solved by C.D.Suraweera, M.G.Hinds, M.Kvansakul, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.62 / 2.12
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	55.376, 55.376, 126.945, 90.00, 90.00, 90.00
R / Rfree (%)	24 / 25.4

The binding sites of Sodium atom in the Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis (pdb code 6trr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis, PDB code: 6trr:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:70.8 occ:1.00 HZ2 A:LYS127 2.1 62.4 1.0 OE2 A:GLU86 2.3 59.5 0.5 OE1 A:GLU86 2.7 60.3 0.5 CD A:GLU86 2.9 61.6 0.5 NZ A:LYS127 3.0 52.0 1.0 OE2 A:GLU130 3.3 57.3 1.0 HD3 A:LYS127 3.3 59.3 1.0 HZ1 A:LYS127 3.3 62.4 1.0 HZ3 A:LYS127 3.4 62.4 1.0 HG2 A:GLU86 3.5 77.7 0.5 CE A:LYS127 3.8 50.3 1.0 HE2 A:LYS127 3.9 60.3 1.0 CD A:LYS127 3.9 49.4 1.0 OE1 A:GLU130 4.0 59.9 1.0 CD A:GLU130 4.0 58.3 1.0 HD2 A:LYS127 4.2 59.3 1.0 CG A:GLU86 4.4 64.9 0.5 CG A:GLU86 4.4 64.7 0.5 O A:HOH310 4.6 55.4 1.0 HG3 A:GLU86 4.7 77.8 0.5 HG2 A:GLU86 4.7 77.8 0.5 HE3 A:LYS127 4.7 60.3 1.0 HA A:GLU86 4.8 75.1 1.0 CD A:GLU86 4.8 70.6 0.5 HG3 A:GLU86 4.9 77.7 0.5

Sodium binding site 2 out of 2 in the Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:97.6 occ:1.00 OE1 A:GLU86 2.3 76.2 0.5 CD A:GLU86 2.8 70.6 0.5 HA A:GLU83 2.8 68.2 1.0 HB2 A:GLU86 2.9 77.3 0.5 HG2 A:GLU83 2.9 87.2 1.0 HB2 A:GLU86 2.9 77.3 0.5 HG3 A:GLU86 3.0 77.8 0.5 OE2 A:GLU86 3.3 73.4 0.5 HB3 A:GLU86 3.4 77.3 0.5 HB3 A:GLU86 3.4 77.3 0.5 CB A:GLU86 3.4 64.4 0.5 CB A:GLU86 3.4 64.4 0.5 HB3 A:GLU83 3.5 78.1 1.0 CG A:GLU86 3.6 64.7 0.5 CG A:GLU86 3.6 64.9 0.5 CA A:GLU83 3.7 56.8 1.0 CG A:GLU83 3.7 72.7 1.0 CB A:GLU83 3.8 65.1 1.0 HG3 A:GLU86 3.9 77.7 0.5 O A:GLU83 4.1 56.8 1.0 HG2 A:GLU86 4.1 77.8 0.5 HG3 A:GLU83 4.2 87.2 1.0 C A:GLU83 4.4 55.4 1.0 HG2 A:GLU86 4.4 77.7 0.5 HD21 A:ASN87 4.5 0.3 1.0 OD1 A:ASN87 4.7 92.4 1.0 CD A:GLU83 4.8 77.0 1.0 N A:GLU83 4.8 50.7 1.0 HB2 A:GLU83 4.8 78.1 1.0 CD A:GLU86 4.8 61.6 0.5 CA A:GLU86 4.9 62.6 0.5 CA A:GLU86 4.9 62.6 0.5 ND2 A:ASN87 4.9 93.6 1.0 H A:ASN87 5.0 76.9 1.0

C.D.Suraweera, M.I.Anasir, S.Chugh, A.Javorsky, R.E.Impey, M.Hasan Zadeh, T.P.Soares Da Costa, M.G.Hinds, M.Kvansakul. Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 32412687
DOI: 10.1111/FEBS.15365