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Sodium in PDB 6moh: Dimeric Darpin C_R3 Complex with Epor

Protein crystallography data

The structure of Dimeric Darpin C_R3 Complex with Epor, PDB code: 6moh was solved by K.M.Jude, K.Mohan, K.C.Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.02 / 3.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 96.193, 96.193, 286.401, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 27.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Dimeric Darpin C_R3 Complex with Epor (pdb code 6moh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Dimeric Darpin C_R3 Complex with Epor, PDB code: 6moh:

Sodium binding site 1 out of 1 in 6moh

Go back to Sodium Binding Sites List in 6moh
Sodium binding site 1 out of 1 in the Dimeric Darpin C_R3 Complex with Epor


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Dimeric Darpin C_R3 Complex with Epor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:26.8
occ:1.00
O2 A:PO4201 2.8 58.9 1.0
O1 A:PO4201 2.9 79.0 1.0
P A:PO4201 3.4 80.7 1.0
O A:GLY121 3.5 23.4 1.0
ND1 A:HIS122 3.6 24.1 1.0
CA A:HIS122 4.0 25.7 1.0
O3 A:PO4201 4.2 83.0 1.0
C A:GLY121 4.3 27.2 1.0
CE1 A:HIS122 4.4 28.1 1.0
N A:HIS122 4.5 29.1 1.0
O4 A:PO4201 4.6 73.2 1.0
N A:LYS123 4.6 40.2 1.0
CG A:HIS122 4.6 27.7 1.0
CB A:HIS122 4.8 20.8 1.0
C A:HIS122 4.9 31.1 1.0

Reference:

K.Mohan, G.Ueda, A.R.Kim, K.M.Jude, J.A.Fallas, Y.Guo, M.Hafer, Y.Miao, R.A.Saxton, J.Piehler, V.G.Sankaran, D.Baker, K.C.Garcia. Topological Control of Cytokine Receptor Signaling Induces Differential Effects in Hematopoiesis. Science V. 364 2019.
ISSN: ESSN 1095-9203
PubMed: 31123111
DOI: 10.1126/SCIENCE.AAV7532
Page generated: Tue Dec 15 12:36:19 2020

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