Sodium in PDB 6zo7: 3-Formylrifamycin Sv Binding to the Access Pocket of Acrb-G619P L and T Protomer

The structure of 3-Formylrifamycin Sv Binding to the Access Pocket of Acrb-G619P L and T Protomer, PDB code: 6zo7 was solved by H.K.Tam, W.E.Foong, K.M.Pos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.86 / 2.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	144.732, 157.683, 244.044, 90, 90, 90
R / Rfree (%)	23.8 / 27.1

The structure of 3-Formylrifamycin Sv Binding to the Access Pocket of Acrb-G619P L and T Protomer also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the 3-Formylrifamycin Sv Binding to the Access Pocket of Acrb-G619P L and T Protomer (pdb code 6zo7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 3-Formylrifamycin Sv Binding to the Access Pocket of Acrb-G619P L and T Protomer, PDB code: 6zo7:

Sodium binding site 1 out of 1 in the 3-Formylrifamycin Sv Binding to the Access Pocket of Acrb-G619P L and T Protomer


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 3-Formylrifamycin Sv Binding to the Access Pocket of Acrb-G619P L and T Protomer within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1114 b:34.2 occ:1.00 OE1 C:GLN360 3.3 65.6 1.0 O C:PHE358 3.5 62.5 1.0 O C:LEU359 3.8 64.8 1.0 NH2 C:ARG973 3.8 57.4 1.0 CD C:GLN360 4.0 65.2 1.0 OD1 C:ASN517 4.0 63.8 1.0 NZ C:LYS509 4.1 70.0 1.0 ND2 C:ASN517 4.3 63.7 1.0 CG C:ASN517 4.5 63.3 1.0 C C:LEU359 4.5 64.3 1.0 CG C:GLN360 4.5 65.4 1.0 O C:HIS505 4.7 66.2 1.0 C C:PHE358 4.7 61.8 1.0 NE2 C:GLN360 4.7 65.1 1.0 CB C:GLN360 4.8 65.6 1.0 CZ C:ARG973 4.8 57.5 1.0 CA C:LEU359 4.8 63.4 1.0

H.K.Tam, W.E.Foong, K.M.Pos. 3-Formylrifamycin Sv Binding to the Access Pocket of Acrb-G619P L and T Protomer To Be Published.