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Sodium in PDB 6zt2: 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 3-Chloro-2,6-Difluorophenol

Protein crystallography data

The structure of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 3-Chloro-2,6-Difluorophenol, PDB code: 6zt2 was solved by M.J.Badran, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.37 / 1.95
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 91.171, 91.171, 133.47, 90, 90, 90
R / Rfree (%) 17.5 / 21.6

Other elements in 6zt2:

The structure of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 3-Chloro-2,6-Difluorophenol also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 3-Chloro-2,6-Difluorophenol (pdb code 6zt2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 3-Chloro-2,6-Difluorophenol, PDB code: 6zt2:

Sodium binding site 1 out of 1 in 6zt2

Go back to Sodium Binding Sites List in 6zt2
Sodium binding site 1 out of 1 in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 3-Chloro-2,6-Difluorophenol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 3-Chloro-2,6-Difluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:31.6
occ:1.00
O A:HOH463 2.3 29.6 0.5
O A:HOH463 2.3 26.4 0.5
O A:LEU53 2.4 24.1 1.0
O A:GLU50 2.4 26.5 1.0
O A:ALA56 2.5 25.6 1.0
O A:PRO54 3.3 25.6 0.4
C A:LEU53 3.4 25.5 1.0
C A:GLU50 3.5 25.9 1.0
C A:PRO54 3.6 25.1 0.4
CA A:PRO54 3.6 25.9 0.4
C A:ALA56 3.6 26.2 1.0
CA A:PRO54 3.8 25.9 0.6
N A:ALA56 3.9 25.2 1.0
N A:PRO54 3.9 27.4 0.6
N A:PRO54 4.0 27.3 0.4
CA A:GLU50 4.0 22.3 1.0
N A:GLY55 4.0 23.9 0.6
CG A:GLU50 4.1 27.6 1.0
C A:PRO54 4.2 24.9 0.6
CA A:ALA56 4.2 23.7 1.0
N A:GLY55 4.5 25.1 0.4
CB A:GLU50 4.5 24.4 1.0
CA A:LEU53 4.6 22.1 1.0
N A:LEU53 4.6 21.3 1.0
N A:GLN51 4.6 20.6 1.0
CB A:ALA56 4.7 22.6 1.0
N A:VAL57 4.7 20.3 1.0
C A:GLY55 4.7 24.2 0.6
C A:GLY55 4.9 24.3 0.4
CG1 A:VAL57 4.9 24.2 1.0
CA A:GLY55 4.9 22.1 0.6
CA A:GLN51 5.0 22.4 1.0
CA A:VAL57 5.0 22.5 1.0

Reference:

M.J.Badran, A.Heine, G.Klebe. 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 3-Chloro-2,6-Difluorophenol To Be Published.
Page generated: Tue Oct 8 15:39:58 2024

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