Sodium in PDB 6zra: 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol

The structure of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol, PDB code: 6zra was solved by M.J.Badran, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.20 / 1.73
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	91.15, 91.15, 132.498, 90, 90, 90
R / Rfree (%)	16.7 / 17.7

The structure of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol (pdb code 6zra). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol, PDB code: 6zra:

Sodium binding site 1 out of 1 in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:28.9 occ:1.00 O A:LEU53 2.3 23.9 1.0 O A:HOH513 2.4 30.3 0.5 O A:GLU50 2.4 24.7 1.0 O A:HOH513 2.4 30.1 0.5 O A:ALA56 2.4 22.2 1.0 O A:HOH480 2.6 36.8 1.0 C A:LEU53 3.3 24.2 1.0 C A:GLU50 3.4 24.0 1.0 O A:PRO54 3.4 26.9 0.5 C A:ALA56 3.6 24.6 1.0 CG A:GLU50 3.6 26.2 1.0 C A:PRO54 3.7 24.6 0.5 CA A:PRO54 3.7 25.1 0.5 CA A:PRO54 3.8 25.2 0.5 N A:ALA56 3.9 22.7 1.0 N A:PRO54 3.9 25.3 0.5 CA A:GLU50 3.9 22.3 1.0 N A:PRO54 4.0 25.1 0.5 N A:GLY55 4.1 21.9 0.5 CA A:ALA56 4.2 18.9 1.0 C A:PRO54 4.3 23.6 0.5 CB A:GLU50 4.4 23.5 1.0 CA A:LEU53 4.4 21.6 1.0 N A:LEU53 4.5 21.8 1.0 N A:GLY55 4.5 22.1 0.5 N A:GLN51 4.6 22.1 1.0 N A:VAL57 4.7 19.3 1.0 CB A:ALA56 4.7 23.3 1.0 CD A:GLU50 4.7 35.2 1.0 C A:GLY55 4.8 23.1 0.5 CA A:GLN51 4.9 21.9 1.0 OE1 A:GLU50 4.9 40.0 1.0 C A:GLN51 4.9 23.3 1.0 O A:LEU49 4.9 23.4 1.0 C A:GLY55 5.0 23.0 0.5 CA A:GLY55 5.0 23.2 0.5 CG1 A:VAL57 5.0 23.6 1.0 CA A:VAL57 5.0 21.9 1.0

M.J.Badran, A.Heine, G.Klebe. 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol To Be Published.