Sodium in PDB 5iph: Xanthomonas Campestris Peroxiredoxin Q - C84S Mutant

The structure of Xanthomonas Campestris Peroxiredoxin Q - C84S Mutant, PDB code: 5iph was solved by A.Perkins, D.Parsonage, K.J.Nelson, L.B.Poole, A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.32 / 1.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	35.304, 50.797, 39.486, 90.00, 103.59, 90.00
R / Rfree (%)	16.8 / 20.6

The binding sites of Sodium atom in the Xanthomonas Campestris Peroxiredoxin Q - C84S Mutant (pdb code 5iph). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Xanthomonas Campestris Peroxiredoxin Q - C84S Mutant, PDB code: 5iph:

Sodium binding site 1 out of 1 in the Xanthomonas Campestris Peroxiredoxin Q - C84S Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Xanthomonas Campestris Peroxiredoxin Q - C84S Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:24.5 occ:1.00 O A:HIS33 2.8 11.2 1.0 O A:SER129 2.9 11.9 1.0 O A:HOH441 2.9 23.3 1.0 O A:HIS30 3.1 14.8 1.0 C A:HIS30 3.7 13.6 1.0 C A:SER129 3.8 12.4 1.0 CB A:LEU35 4.0 10.7 1.0 CB A:HIS30 4.0 13.9 1.0 CA A:PRO130 4.0 13.1 1.0 C A:HIS33 4.1 11.8 1.0 O A:LEU128 4.3 11.4 1.0 C A:PRO130 4.3 13.5 1.0 N A:ALA31 4.3 13.9 1.0 N A:GLY132 4.3 15.7 1.0 O A:PRO130 4.3 15.0 1.0 N A:LEU35 4.4 8.6 1.0 N A:PRO130 4.4 12.8 1.0 CA A:ALA31 4.5 14.7 1.0 CB A:LEU128 4.5 12.2 1.0 CA A:HIS30 4.5 13.7 1.0 CA A:GLY132 4.5 15.5 1.0 C A:LEU128 4.6 10.8 1.0 C A:TRP34 4.7 9.4 1.0 N A:HIS33 4.7 14.2 1.0 O A:LEU27 4.7 13.2 1.0 CD2 A:LEU35 4.8 14.3 1.0 CA A:TRP34 4.8 9.8 1.0 CA A:LEU35 4.8 9.3 1.0 N A:GLY32 4.9 14.5 1.0 N A:SER129 4.9 10.9 1.0 N A:TRP34 4.9 11.0 1.0 N A:GLU131 4.9 15.5 1.0 C A:ALA31 5.0 14.6 1.0 CA A:SER129 5.0 11.4 1.0

A.Perkins, D.Parsonage, K.J.Nelson, O.M.Ogba, P.H.Cheong, L.B.Poole, P.A.Karplus. Peroxiredoxin Catalysis at Atomic Resolution. Structure V. 24 1668 2016.
ISSN: ISSN 0969-2126
PubMed: 27594682
DOI: 10.1016/J.STR.2016.07.012