Sodium in PDB, part 138 (files: 5481-5520),
PDB 5bpl-5ccx
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 5481-5520 (PDB 5bpl-5ccx).
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5bpl (Na: 2) - Crystal Structure of Adp and Pi Bound Human HSP70 Nbd Mutant R272K.
Other atoms:
Mg (1);
Cl (1);
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5bpm (Na: 1) - Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K.
Other atoms:
Mg (1);
Cl (2);
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5bqf (Na: 1) - Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid
Other atoms:
Cl (1);
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5bqs (Na: 2) - S. Pneumoniae Fabh with Small Molecule Inhibitor 4
Other atoms:
Cl (2);
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5br7 (Na: 2) - Structure of Udp-Galactopyranose Mutase From Corynebacterium Diphtheriae in Complex with Citrate Ion
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5brb (Na: 2) - Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
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5bry (Na: 2) - Hiv-1 Wild Type Protease with Grl-011-11A (A Methylamine Bis- Tetrahydrofuran P2-Ligand, Sulfonamide Isostere Derivate)
Other atoms:
Cl (3);
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5bs4 (Na: 1) - Hiv-1 Wild Type Protease with Grl-047-11A (A Methylamine Bis- Tetrahydrofuran P2-Ligand, 4-Amino Sulfonamide Derivative)
Other atoms:
Cl (2);
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5btm (Na: 2) - Crystal Structure of Auucu Repeating Rna That Causes Spinocerebellar Ataxia Type 10 (SCA10)
Other atoms:
Mg (3);
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5bv6 (Na: 1) - Pkg II'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Cgmp
Other atoms:
Ca (2);
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5bw6 (Na: 1) - Tryptophan Synthase From Salmonella Typhimurium in Complex with A Single Molecule of 2-({[4-(Trifluoromethoxy)Phenyl]Carbonyl}Amino) Ethyl Dihydrogen Phosphate (F6) in the Alpha-Site.
Other atoms:
F (3);
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5bwi (Na: 1) - Crystallographic Structure of A Bacterial Heparanase
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5by4 (Na: 3) - Structure and Function of the Escherichia Coli Tol-Pal Stator Protein Tolr
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5byc (Na: 2) - Crystal Structure of Human Ribokinase in C2 Spacegroup
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5byd (Na: 1) - Crystal Structure of Human Ribokinase in P21 Spacegroup
Other atoms:
K (1);
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5bye (Na: 2) - Crystal Structure of Human Ribokinase in P212121 Spacegroup
Other atoms:
Cl (1);
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5byf (Na: 4) - Crystal Structure of Human Ribokinase in Complex with Amp
Other atoms:
Cl (1);
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5byk (Na: 1) - Schistosoma Mansoni (Blood Fluke) Sulfotransferase/S-Oxamniquine Complex
Other atoms:
As (1);
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5bzb (Na: 6) - Navms Voltage-Gated Sodium Channel Pore and C-Terminal Domain
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5c1o (Na: 5) - Crystal Structure of Amp-Pnp Complexed D-Alanine-D-Alanine Ligase(Ddl) From Yersinia Pestis
Other atoms:
Mg (4);
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5c1p (Na: 5) - Crystal Structure of Adp and D-Alanyl-D-Alanine Complexed D-Alanine-D- Alanine Ligase(Ddl) From Yersinia Pestis
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5c3y (Na: 24) - Structure of Human Ribokinase Crystallized with Amppnp
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5c3z (Na: 4) - Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup
Other atoms:
Cl (3);
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5c40 (Na: 4) - Crystal Structure of Human Ribokinase in Complex with Amppcp in P21 Spacegroup
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5c41 (Na: 8) - Crystal Structure of Human Ribokinase in Complex with Amppcp in P21 Spacegroup and with 4 Protomers
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5c4i (Na: 2) - Structure of An Oxalate Oxidoreductase
Other atoms:
Mg (2);
Fe (24);
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5c4w (Na: 1) - Crystal Structure of Coxsackievirus A16
Other atoms:
K (2);
Cl (5);
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5c68 (Na: 1) - Crystal Structure of C-As Lyase at 1.46 Angstroms Resolution
Other atoms:
Ni (1);
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5c6c (Na: 1) - Pkg II'S Amino Terminal Cyclic Nucleotide Binding Domain (Cnb-A) in A Complex with Camp
Other atoms:
Co (4);
Cd (6);
Ca (2);
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5c6m (Na: 2) - Crystal Structure of Deoxyribose-Phosphate Aldolase From Shewanella Halifaxensis
Other atoms:
Cl (4);
-
5c6x (Na: 2) - Crystal Structure of C-As Lyase with Co(II)
Other atoms:
Co (1);
-
5c7g (Na: 1) - Crystal Structure of the B1 Domain of Human Neuropilin-1 in Complex with A Bicine Molecule
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5c80 (Na: 2) - X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 2.24 A Resolution
Other atoms:
Cl (6);
-
5c8w (Na: 3) - Pkg II'S Amino Terminal Cyclic Nucleotide Binding Domain (Cnb-A) in A Complex with Cgmp
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5c9d (Na: 1) - Crystal Structure of A Retropepsin-Like Aspartic Protease From Rickettsia Conorii
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5c9f (Na: 3) - Crystal Structure of A Retropepsin-Like Aspartic Protease From Rickettsia Conorii
Other atoms:
Cl (12);
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5cb6 (Na: 1) - Structure of Adenosine-5'-Phosphosulfate Kinase
Other atoms:
Mg (6);
As (2);
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5ccb (Na: 1) - Crystal Structure of Human M1A58 Methyltransferase in A Complex with TRNA3LYS and Sah
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5ccu (Na: 1) - Crystal Structure of Endoglycoceramidase I From Rhodococ-Cus Equi
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5ccx (Na: 1) - Structure of the Product Complex of Trna M1A58 Methyltransferase with TRNA3LYS As Substrate
Page generated: Thu Dec 28 11:21:44 2023
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