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Sodium in PDB, part 138 (files: 5481-5520), PDB 5bpc-5cb6

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5481-5520 (PDB 5bpc-5cb6).
  1. 5bpc (Na: 1) - Dna Polymerase Beta Ternary Complex with A Templating 5CLC and Incoming Datp Analog
    Other atoms: Mn (4); Cl (1);
  2. 5bpf (Na: 5) - Crystal Structure of Adp Complexed D-Alanine-D-Alanine Ligase(Ddl) From Yersinia Pestis
  3. 5bph (Na: 5) - Crystal Structure of Amp Complexed D-Alanine-D-Alanine Ligase(Ddl) From Yersinia Pestis
  4. 5bpl (Na: 2) - Crystal Structure of Adp and Pi Bound Human HSP70 Nbd Mutant R272K.
    Other atoms: Mg (1); Cl (1);
  5. 5bpm (Na: 1) - Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K.
    Other atoms: Mg (1); Cl (2);
  6. 5bqf (Na: 1) - Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid
    Other atoms: Cl (1);
  7. 5bqs (Na: 2) - S. Pneumoniae Fabh with Small Molecule Inhibitor 4
    Other atoms: Cl (2);
  8. 5br7 (Na: 2) - Structure of Udp-Galactopyranose Mutase From Corynebacterium Diphtheriae in Complex with Citrate Ion
  9. 5brb (Na: 2) - Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
  10. 5bry (Na: 2) - Hiv-1 Wild Type Protease with Grl-011-11A (A Methylamine Bis- Tetrahydrofuran P2-Ligand, Sulfonamide Isostere Derivate)
    Other atoms: Cl (3);
  11. 5bs4 (Na: 1) - Hiv-1 Wild Type Protease with Grl-047-11A (A Methylamine Bis- Tetrahydrofuran P2-Ligand, 4-Amino Sulfonamide Derivative)
    Other atoms: Cl (2);
  12. 5btm (Na: 2) - Crystal Structure of Auucu Repeating Rna That Causes Spinocerebellar Ataxia Type 10 (SCA10)
    Other atoms: Mg (3);
  13. 5bv6 (Na: 1) - Pkg II'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Cgmp
    Other atoms: Ca (2);
  14. 5bw6 (Na: 1) - Tryptophan Synthase From Salmonella Typhimurium in Complex with A Single Molecule of 2-({[4-(Trifluoromethoxy)Phenyl]Carbonyl}Amino) Ethyl Dihydrogen Phosphate (F6) in the Alpha-Site.
    Other atoms: F (3);
  15. 5bwi (Na: 1) - Crystallographic Structure of A Bacterial Heparanase
  16. 5by4 (Na: 3) - Structure and Function of the Escherichia Coli Tol-Pal Stator Protein Tolr
  17. 5byc (Na: 2) - Crystal Structure of Human Ribokinase in C2 Spacegroup
  18. 5byd (Na: 1) - Crystal Structure of Human Ribokinase in P21 Spacegroup
    Other atoms: K (1);
  19. 5bye (Na: 2) - Crystal Structure of Human Ribokinase in P212121 Spacegroup
    Other atoms: Cl (1);
  20. 5byf (Na: 4) - Crystal Structure of Human Ribokinase in Complex with Amp
    Other atoms: Cl (1);
  21. 5byk (Na: 1) - Schistosoma Mansoni (Blood Fluke) Sulfotransferase/S-Oxamniquine Complex
    Other atoms: As (1);
  22. 5bzb (Na: 6) - Navms Voltage-Gated Sodium Channel Pore and C-Terminal Domain
  23. 5c1o (Na: 5) - Crystal Structure of Amp-Pnp Complexed D-Alanine-D-Alanine Ligase(Ddl) From Yersinia Pestis
    Other atoms: Mg (4);
  24. 5c1p (Na: 5) - Crystal Structure of Adp and D-Alanyl-D-Alanine Complexed D-Alanine-D- Alanine Ligase(Ddl) From Yersinia Pestis
  25. 5c3y (Na: 24) - Structure of Human Ribokinase Crystallized with Amppnp
  26. 5c3z (Na: 4) - Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup
    Other atoms: Cl (3);
  27. 5c40 (Na: 4) - Crystal Structure of Human Ribokinase in Complex with Amppcp in P21 Spacegroup
  28. 5c41 (Na: 8) - Crystal Structure of Human Ribokinase in Complex with Amppcp in P21 Spacegroup and with 4 Protomers
  29. 5c4i (Na: 2) - Structure of An Oxalate Oxidoreductase
    Other atoms: Mg (2); Fe (24);
  30. 5c4w (Na: 1) - Crystal Structure of Coxsackievirus A16
    Other atoms: K (2); Cl (5);
  31. 5c68 (Na: 1) - Crystal Structure of C-As Lyase at 1.46 Angstroms Resolution
    Other atoms: Ni (1);
  32. 5c6c (Na: 1) - Pkg II'S Amino Terminal Cyclic Nucleotide Binding Domain (Cnb-A) in A Complex with Camp
    Other atoms: Co (4); Cd (6); Ca (2);
  33. 5c6m (Na: 2) - Crystal Structure of Deoxyribose-Phosphate Aldolase From Shewanella Halifaxensis
    Other atoms: Cl (4);
  34. 5c6x (Na: 2) - Crystal Structure of C-As Lyase with Co(II)
    Other atoms: Co (1);
  35. 5c7g (Na: 1) - Crystal Structure of the B1 Domain of Human Neuropilin-1 in Complex with A Bicine Molecule
  36. 5c80 (Na: 2) - X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 2.24 A Resolution
    Other atoms: Cl (6);
  37. 5c8w (Na: 3) - Pkg II'S Amino Terminal Cyclic Nucleotide Binding Domain (Cnb-A) in A Complex with Cgmp
  38. 5c9d (Na: 1) - Crystal Structure of A Retropepsin-Like Aspartic Protease From Rickettsia Conorii
  39. 5c9f (Na: 3) - Crystal Structure of A Retropepsin-Like Aspartic Protease From Rickettsia Conorii
    Other atoms: Cl (12);
  40. 5cb6 (Na: 1) - Structure of Adenosine-5'-Phosphosulfate Kinase
    Other atoms: Mg (6); As (2);
Page generated: Fri Dec 24 09:47:52 2021

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