Sodium in PDB 5bqf: Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid

The structure of Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid, PDB code: 5bqf was solved by K.M.Langner, I.G.Shabalin, K.B.Handing, O.A.Gasiorowska, M.Stead, B.S.Hillerich, S.Chowdhury, J.Hammonds, M.D.Zimmerman, N.Al Obaidi, J.Bonanno, R.Seidel, S.C.Almo, W.Minor, New York Structural Genomicsresearch Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.45
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	65.692, 65.692, 151.406, 90.00, 90.00, 90.00
R / Rfree (%)	13.9 / 16.5

The structure of Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid (pdb code 5bqf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid, PDB code: 5bqf:

Sodium binding site 1 out of 1 in the Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Na405 b:22.6 occ:0.80 OG A:SER245 2.4 21.2 1.0 OG1 A:THR241 2.4 26.8 1.0 O A:HOH707 2.4 26.9 1.0 O A:THR241 2.4 17.6 1.0 C A:THR241 3.2 17.8 1.0 CB A:THR241 3.5 21.6 1.0 CB A:SER245 3.6 16.9 1.0 CA A:THR241 3.7 19.8 1.0 CG2 A:THR241 4.0 16.8 1.0 N A:SER245 4.1 15.6 1.0 N A:ASP242 4.1 15.6 1.0 O A:HOH539 4.2 39.9 1.0 CA A:SER245 4.4 18.3 1.0 O A:HOH902 4.5 60.5 1.0 CA A:ASP242 4.6 14.8 1.0 CL A:CL406 4.7 24.9 0.8 OD1 A:ASP242 4.8 19.7 1.0 CB A:VAL244 5.0 18.3 1.0

K.M.Langner, I.G.Shabalin, K.B.Handing, O.A.Gasiorowska, S.Chowdhury, M.D.Zimmerman, W.Minor. Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L-Tartaric Acid To Be Published.