Atomistry » Sodium » PDB 5bpl-5ccx » 5brb
Atomistry »
  Sodium »
    PDB 5bpl-5ccx »
      5brb »

Sodium in PDB 5brb: Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum

Enzymatic activity of Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum

All present enzymatic activity of Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum, PDB code: 5brb was solved by D.Bandyopadhyay, M.R.N.Murthy, H.Balaram, P.Balaram, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 73.57 / 2.53
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.020, 75.350, 74.130, 90.00, 97.72, 90.00
R / Rfree (%) 22.9 / 29.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum (pdb code 5brb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum, PDB code: 5brb:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 5brb

Go back to Sodium Binding Sites List in 5brb
Sodium binding site 1 out of 2 in the Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:34.1
occ:1.00
O A:GLN223 2.4 25.6 1.0
O A:ILE226 2.6 22.4 1.0
O A:ILE221 2.8 24.3 1.0
OH A:TYR5 2.9 25.3 1.0
C A:GLN223 3.6 24.9 1.0
CZ A:TYR5 3.7 25.5 1.0
C A:ILE226 3.7 23.0 1.0
O A:GLU224 3.8 25.0 1.0
CE1 A:TYR5 3.8 25.6 1.0
C A:ILE221 3.9 24.0 1.0
C A:GLU224 4.1 25.1 1.0
N A:ILE226 4.2 23.2 1.0
OD1 A:ASP227 4.2 23.7 1.0
C A:GLN222 4.3 23.5 1.0
N A:GLN223 4.3 23.6 1.0
CA A:GLU224 4.4 25.9 1.0
N A:GLU224 4.5 25.7 1.0
CA A:ILE226 4.5 23.1 1.0
O A:GLN222 4.6 23.6 1.0
CA A:GLN223 4.6 24.0 1.0
N A:ASP227 4.7 23.4 1.0
CA A:GLN222 4.7 23.3 1.0
N A:GLN222 4.8 23.5 1.0
CA A:ASP227 4.8 23.2 1.0
N A:ASP225 4.8 23.8 1.0
CA A:ILE221 4.9 23.9 1.0
CE2 A:TYR5 4.9 25.7 1.0
CB A:ILE226 4.9 23.2 1.0
CD1 A:ILE221 5.0 24.0 1.0

Sodium binding site 2 out of 2 in 5brb

Go back to Sodium Binding Sites List in 5brb
Sodium binding site 2 out of 2 in the Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Q64E Mutant of Triosephosphate Isomerase From Plasmodium Falciparum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na301

b:40.0
occ:1.00
O B:GLN223 2.7 23.1 1.0
OH B:TYR5 2.8 19.4 1.0
O B:ILE226 2.8 21.8 1.0
O B:GLU224 3.1 24.1 1.0
O B:ILE221 3.5 23.5 1.0
CZ B:TYR5 3.6 19.9 1.0
C B:GLU224 3.7 23.5 1.0
C B:GLN223 3.8 23.3 1.0
CE1 B:TYR5 3.8 20.0 1.0
C B:ILE226 3.9 21.9 1.0
CA B:GLU224 4.1 23.6 1.0
N B:ILE226 4.3 22.1 1.0
N B:GLU224 4.4 23.4 1.0
OD1 B:ASP227 4.5 21.2 1.0
N B:ASP225 4.6 23.1 1.0
C B:ILE221 4.7 23.2 1.0
C B:GLN222 4.7 24.1 1.0
CA B:ILE226 4.7 21.9 1.0
N B:GLN223 4.8 24.0 1.0
CE2 B:TYR5 4.8 20.1 1.0
N B:ASP227 4.8 21.3 1.0
O B:GLN222 4.9 24.9 1.0
C B:ASP225 4.9 22.5 1.0
CA B:ASP227 4.9 21.1 1.0
CA B:GLN223 4.9 23.7 1.0

Reference:

D.Bandyopadhyay, M.R.Murthy, H.Balaram, P.Balaram. Probing the Role of Highly Conserved Residues in Triosephosphate Isomerase - Analysis of Site Specific Mutants at Positions 64 and 75 in the Plasmodial Enzyme Febs J. V. 282 3863 2015.
ISSN: ISSN 1742-464X
PubMed: 26206206
DOI: 10.1111/FEBS.13384
Page generated: Mon Oct 7 20:10:04 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy