Sodium in PDB 5c6x: Crystal Structure of C-As Lyase with Co(II)

The structure of Crystal Structure of C-As Lyase with Co(II), PDB code: 5c6x was solved by S.Venkadesh, M.Yoshinaga, B.Sankaran, P.Kandavelu, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	42.420, 42.420, 117.610, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 23.8

The structure of Crystal Structure of C-As Lyase with Co(II) also contains other interesting chemical elements:

Cobalt

(Co)

1 atom

The binding sites of Sodium atom in the Crystal Structure of C-As Lyase with Co(II) (pdb code 5c6x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of C-As Lyase with Co(II), PDB code: 5c6x:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of C-As Lyase with Co(II)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C-As Lyase with Co(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:25.9 occ:0.50 O A:HOH383 3.0 46.4 1.0 N A:LEU63 3.0 17.6 0.5 N A:LEU63 3.0 17.6 0.5 CB A:LEU63 3.6 21.1 0.5 CB A:LEU63 3.6 21.2 0.5 CA A:ARG62 3.7 19.2 1.0 CB A:ARG62 3.8 24.8 1.0 C A:ARG62 3.8 18.9 1.0 CA A:LEU63 3.9 19.6 0.5 CA A:LEU63 3.9 19.6 0.5 O A:LEU63 4.6 21.3 0.5 O A:LEU63 4.6 21.3 0.5 C A:LEU63 4.8 20.9 0.5 C A:LEU63 4.8 20.9 0.5

Sodium binding site 2 out of 2 in the Crystal Structure of C-As Lyase with Co(II)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of C-As Lyase with Co(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na204 b:22.0 occ:1.00 O A:PRO47 2.8 15.2 1.0 N A:VAL7 2.8 14.3 0.5 N A:VAL7 2.8 14.3 0.5 CG2 A:VAL7 3.3 23.4 0.5 CA A:ARG6 3.3 17.4 1.0 CG2 A:VAL7 3.5 13.4 0.5 C A:ARG6 3.5 14.8 1.0 CB A:ARG6 3.7 17.6 1.0 CG1 A:VAL7 3.7 21.6 0.5 CB A:VAL7 3.8 15.3 0.5 C A:PRO47 3.8 13.5 1.0 CA A:VAL7 3.8 14.0 0.5 CB A:VAL7 3.9 15.7 0.5 CA A:VAL7 3.9 14.0 0.5 CB A:PRO47 3.9 18.1 1.0 O A:SER5 4.3 23.6 1.0 CA A:PRO47 4.4 14.7 1.0 N A:ARG6 4.5 16.1 1.0 CG A:PRO47 4.7 24.4 1.0 N A:LEU48 4.7 13.0 1.0 O A:ARG6 4.7 14.9 1.0 O A:VAL7 4.8 14.2 0.5 O A:VAL7 4.8 14.2 0.5 C A:VAL7 4.8 14.1 0.5 C A:SER5 4.9 20.1 1.0 C A:VAL7 4.9 14.1 0.5 N A:PRO47 4.9 15.3 1.0 CD A:PRO47 4.9 19.0 1.0 CA A:LEU48 5.0 13.9 1.0

S.Venkadesh, M.Yoshinaga, B.Sankaran, P.Kandavelu, B.P.Rosen. Crystal Structure of C-As Lyase with Co(II) To Be Published.