Atomistry » Sodium » PDB 5b15-5bph
Atomistry »
  Sodium »
    PDB 5b15-5bph »
      5b15 »
      5b1a »
      5b1b »
      5b1g »
      5b1f »
      5b1u »
      5b2o »
      5b2p »
      5b2q »
      5b30 »
      5b3j »
      5b3s »
      5b43 »
      5b4u »
      5b4v »
      5b5h »
      5b5o »
      5b6h »
      5b6l »
      5b8d »
      5bju »
      5bjv »
      5bjw »
      5bjx »
      5bjy »
      5bmw »
      5bmx »
      5bn8 »
      5bn9 »
      5bnh »
      5bnk »
      5boj »
      5bnq »
      5bol »
      5bom »
      5bpc »
      5bpf »
      5bph »
      5b5j »
      5b4t »

Sodium in PDB, part 137 (files: 5441-5480), PDB 5b15-5bph

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5441-5480 (PDB 5b15-5bph).
  1. 5b15 (Na: 7) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to Hydrolyzed Doripenem
    Other atoms: Zn (2);
  2. 5b1a (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State at 1.5 Angstrom Resolution
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  3. 5b1b (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Fully Reduced State at 1.6 Angstrom Resolution
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  4. 5b1f (Na: 1) - Crystal Structure of Hen Egg-White Lysozyme
    Other atoms: Cl (1);
  5. 5b1g (Na: 1) - Crystal Structure of Hen Egg-White Lysozyme
    Other atoms: Cl (1);
  6. 5b1u (Na: 15) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to Hydrolyzed Imipenem
    Other atoms: Zn (2);
  7. 5b2o (Na: 4) - Crystal Structure of Francisella Novicida CAS9 in Complex with Sgrna and Target Dna (Tgg Pam)
    Other atoms: Zn (1); Ca (17); Cl (2);
  8. 5b2p (Na: 4) - Crystal Structure of Francisella Novicida CAS9 in Complex with Sgrna and Target Dna (Tga Pam)
    Other atoms: Zn (1); Ca (17); Cl (2);
  9. 5b2q (Na: 4) - Crystal Structure of Francisella Novicida CAS9 Rha in Complex with Sgrna and Target Dna (Tgg Pam)
    Other atoms: Zn (1); Ca (17); Cl (2);
  10. 5b30 (Na: 1) - H-Ras Wt in Complex with Gppnhp (State 1) After Structural Transition By Humidity Control
    Other atoms: Mg (1); Ca (2);
  11. 5b3j (Na: 1) - Activation of Nmda Receptors and the Mechanism of Inhibition By Ifenprodil
  12. 5b3s (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Carbon Monoxide-Bound Mixed- Valence State at 1.68 Angstrom Resolution (50 K)
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  13. 5b43 (Na: 1) - Crystal Structure of Acidaminococcus Sp. CPF1 in Complex with Crrna and Target Dna
  14. 5b4t (Na: 1) - Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and A Substrate D-3- Hydroxybutyrate
  15. 5b4u (Na: 1) - Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate
    Other atoms: Cl (1);
  16. 5b4v (Na: 3) - Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate
    Other atoms: Cl (1);
  17. 5b5h (Na: 2) - Hydrophobic Ice-Binding Site Confer Hyperactivity on Antifreeze Protein From A Snow Mold Fungus
  18. 5b5j (Na: 2) - Hen Egg White Lysozyme with Boron Tracedrug Utx-97
  19. 5b5o (Na: 2) - Crystal Structure of the Catalytic Domain of Mmp-13 Complexed with N- Phenyl-4-((4H-1,2,4-Triazol-3-Ylsulfanyl)Methyl)-1,3-Thiazol-2-Amine
    Other atoms: Ca (4); Zn (4);
  20. 5b6h (Na: 2) - Crystal Structure of An Aprt From Yersinia Pseudotuberculosis in Complex with Amp.
    Other atoms: Cl (1);
  21. 5b6l (Na: 1) - Structure of Deg Protease Hhoa From Synechocystis Sp. Pcc 6803
    Other atoms: Zn (1);
  22. 5b8d (Na: 1) - Crystal Structure of A Low Occupancy Fragment Candidate (N-(4-Methyl- 1,3-Thiazol-2-Yl)Propanamide) Bound Adjacent to the Ubiquitin Binding Pocket of the HDAC6 Zinc-Finger Domain
    Other atoms: Zn (3);
  23. 5bju (Na: 2) - X-Ray Structure of the Pglf Dehydratase From Campylobacter Jejuni in Complex with Udp and Nad(H)
  24. 5bjv (Na: 4) - X-Ray Structure of the Pglf Udp-N-Acetylglucosamine 4,6-Dehydratase From Campylobacterjejuni, D396N/K397A Variant in Complex with Udp-N- Acrtylglucosamine
  25. 5bjw (Na: 4) - X-Ray Structure of the Pglf 4,6-Dehydratase From Campylobacter Jejuni, T595S Variant, in Complex with Udp
  26. 5bjx (Na: 8) - X-Ray Structure of the Pglf 4,6-Dehydratase From Campylobacter Jejuni, Variant T395V, in Complex with Udp
  27. 5bjy (Na: 6) - X-Ray Structure of the Pglf 4,5-Dehydratase From Campylobacter Jejuni, Variant M405Y, in Complex with Udp
  28. 5bmw (Na: 2) - Crystal Structure of T75V Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
    Other atoms: Ca (1);
  29. 5bmx (Na: 4) - Crystal Structure of T75N Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
  30. 5bn8 (Na: 1) - Crystal Structure of Nucleotide-Free Human HSP70 Nbd.
    Other atoms: Mg (2); Cl (1);
  31. 5bn9 (Na: 1) - Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K.
    Other atoms: Cl (1);
  32. 5bnh (Na: 2) - Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment
  33. 5bnk (Na: 2) - Crystal Structure of T75C Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
  34. 5bnq (Na: 1) - Crystal Structure of Hrankl-Mrank Complex
    Other atoms: Cl (8);
  35. 5boj (Na: 1) - Crystal Structure of Human Transthyretin in Complex with Gemfibrozil
  36. 5bol (Na: 1) - Dna Polymerase Beta Ternary Complex with A Templating 5CLC and Incoming Dgtp Analog
    Other atoms: Mg (2); Cl (1);
  37. 5bom (Na: 3) - Dna Polymerase Beta Binary Complex with A Templating 5CLC
    Other atoms: Cl (1);
  38. 5bpc (Na: 1) - Dna Polymerase Beta Ternary Complex with A Templating 5CLC and Incoming Datp Analog
    Other atoms: Mn (4); Cl (1);
  39. 5bpf (Na: 5) - Crystal Structure of Adp Complexed D-Alanine-D-Alanine Ligase(Ddl) From Yersinia Pestis
  40. 5bph (Na: 5) - Crystal Structure of Amp Complexed D-Alanine-D-Alanine Ligase(Ddl) From Yersinia Pestis
Page generated: Wed Nov 27 20:34:19 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy