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Sodium in PDB, part 137 (files: 5441-5480), PDB 5b05-5bom

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5441-5480 (PDB 5b05-5bom).
  1. 5b05 (Na: 8) - Lysozyme (Control Experiment)
    Other atoms: Cl (4);
  2. 5b06 (Na: 8) - Lysozyme (Denatured By Naod and Refolded)
    Other atoms: Cl (4);
  3. 5b07 (Na: 8) - Lysozyme (Denatured By Dcl and Refolded)
    Other atoms: Cl (4);
  4. 5b15 (Na: 7) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to Hydrolyzed Doripenem
    Other atoms: Zn (2);
  5. 5b1a (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State at 1.5 Angstrom Resolution
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  6. 5b1b (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Fully Reduced State at 1.6 Angstrom Resolution
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  7. 5b1f (Na: 1) - Crystal Structure of Hen Egg-White Lysozyme
    Other atoms: Cl (1);
  8. 5b1g (Na: 1) - Crystal Structure of Hen Egg-White Lysozyme
    Other atoms: Cl (1);
  9. 5b1u (Na: 15) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to Hydrolyzed Imipenem
    Other atoms: Zn (2);
  10. 5b2o (Na: 4) - Crystal Structure of Francisella Novicida CAS9 in Complex with Sgrna and Target Dna (Tgg Pam)
    Other atoms: Zn (1); Ca (17); Cl (2);
  11. 5b2p (Na: 4) - Crystal Structure of Francisella Novicida CAS9 in Complex with Sgrna and Target Dna (Tga Pam)
    Other atoms: Zn (1); Ca (17); Cl (2);
  12. 5b2q (Na: 4) - Crystal Structure of Francisella Novicida CAS9 Rha in Complex with Sgrna and Target Dna (Tgg Pam)
    Other atoms: Zn (1); Ca (17); Cl (2);
  13. 5b30 (Na: 1) - H-Ras Wt in Complex with Gppnhp (State 1) After Structural Transition By Humidity Control
    Other atoms: Mg (1); Ca (2);
  14. 5b3j (Na: 1) - Activation of Nmda Receptors and the Mechanism of Inhibition By Ifenprodil
  15. 5b3s (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Carbon Monoxide-Bound Mixed- Valence State at 1.68 Angstrom Resolution (50 K)
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  16. 5b43 (Na: 1) - Crystal Structure of Acidaminococcus Sp. CPF1 in Complex with Crrna and Target Dna
  17. 5b4t (Na: 1) - Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and A Substrate D-3- Hydroxybutyrate
  18. 5b4u (Na: 1) - Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate
    Other atoms: Cl (1);
  19. 5b4v (Na: 3) - Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate
    Other atoms: Cl (1);
  20. 5b5h (Na: 2) - Hydrophobic Ice-Binding Site Confer Hyperactivity on Antifreeze Protein From A Snow Mold Fungus
  21. 5b5j (Na: 2) - Hen Egg White Lysozyme with Boron Tracedrug Utx-97
  22. 5b5o (Na: 2) - Crystal Structure of the Catalytic Domain of Mmp-13 Complexed with N- Phenyl-4-((4H-1,2,4-Triazol-3-Ylsulfanyl)Methyl)-1,3-Thiazol-2-Amine
    Other atoms: Ca (4); Zn (4);
  23. 5b6h (Na: 2) - Crystal Structure of An Aprt From Yersinia Pseudotuberculosis in Complex with Amp.
    Other atoms: Cl (1);
  24. 5b6l (Na: 1) - Structure of Deg Protease Hhoa From Synechocystis Sp. Pcc 6803
    Other atoms: Zn (1);
  25. 5b8d (Na: 1) - Crystal Structure of A Low Occupancy Fragment Candidate (N-(4-Methyl- 1,3-Thiazol-2-Yl)Propanamide) Bound Adjacent to the Ubiquitin Binding Pocket of the HDAC6 Zinc-Finger Domain
    Other atoms: Zn (3);
  26. 5bju (Na: 2) - X-Ray Structure of the Pglf Dehydratase From Campylobacter Jejuni in Complex with Udp and Nad(H)
  27. 5bjv (Na: 4) - X-Ray Structure of the Pglf Udp-N-Acetylglucosamine 4,6-Dehydratase From Campylobacterjejuni, D396N/K397A Variant in Complex with Udp-N- Acrtylglucosamine
  28. 5bjw (Na: 4) - X-Ray Structure of the Pglf 4,6-Dehydratase From Campylobacter Jejuni, T595S Variant, in Complex with Udp
  29. 5bjx (Na: 8) - X-Ray Structure of the Pglf 4,6-Dehydratase From Campylobacter Jejuni, Variant T395V, in Complex with Udp
  30. 5bjy (Na: 6) - X-Ray Structure of the Pglf 4,5-Dehydratase From Campylobacter Jejuni, Variant M405Y, in Complex with Udp
  31. 5bmw (Na: 2) - Crystal Structure of T75V Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
    Other atoms: Ca (1);
  32. 5bmx (Na: 4) - Crystal Structure of T75N Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
  33. 5bn8 (Na: 1) - Crystal Structure of Nucleotide-Free Human HSP70 Nbd.
    Other atoms: Mg (2); Cl (1);
  34. 5bn9 (Na: 1) - Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K.
    Other atoms: Cl (1);
  35. 5bnh (Na: 2) - Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment
  36. 5bnk (Na: 2) - Crystal Structure of T75C Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
  37. 5bnq (Na: 1) - Crystal Structure of Hrankl-Mrank Complex
    Other atoms: Cl (8);
  38. 5boj (Na: 1) - Crystal Structure of Human Transthyretin in Complex with Gemfibrozil
  39. 5bol (Na: 1) - Dna Polymerase Beta Ternary Complex with A Templating 5CLC and Incoming Dgtp Analog
    Other atoms: Mg (2); Cl (1);
  40. 5bom (Na: 3) - Dna Polymerase Beta Binary Complex with A Templating 5CLC
    Other atoms: Cl (1);
Page generated: Wed Nov 4 05:33:24 2020

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