Sodium in PDB 5bnq: Crystal Structure of Hrankl-Mrank Complex

The structure of Crystal Structure of Hrankl-Mrank Complex, PDB code: 5bnq was solved by J.Ren, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.37 / 2.80
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	122.188, 122.188, 94.473, 90.00, 90.00, 120.00
R / Rfree (%)	17.1 / 20.3

The structure of Crystal Structure of Hrankl-Mrank Complex also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Sodium atom in the Crystal Structure of Hrankl-Mrank Complex (pdb code 5bnq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hrankl-Mrank Complex, PDB code: 5bnq:

Sodium binding site 1 out of 1 in the Crystal Structure of Hrankl-Mrank Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hrankl-Mrank Complex within 5.0Å range: probe atom residue distance (Å) B Occ R:Na304 b:51.6 occ:1.00 O R:PHE138 2.5 48.1 1.0 O R:VAL163 2.6 47.9 1.0 OG R:SER161 2.7 45.6 1.0 O R:CYS134 2.9 44.2 1.0 O R:ALA135 2.9 55.7 1.0 C R:CYS134 3.6 45.8 1.0 C R:PHE138 3.7 51.9 1.0 C R:VAL163 3.7 52.9 1.0 C R:ALA135 3.7 56.7 1.0 CB R:SER161 3.8 45.7 1.0 CB R:CYS134 3.9 47.4 1.0 N R:SER165 4.0 45.1 1.0 CG2 R:VAL163 4.3 45.0 1.0 O R:SER165 4.3 56.1 1.0 CA R:CYS134 4.3 45.7 1.0 N R:ALA135 4.4 49.4 1.0 N R:PRO136 4.4 58.4 1.0 CA R:GLY139 4.4 50.6 1.0 N R:GLY139 4.5 52.0 1.0 CA R:PHE164 4.5 47.8 1.0 CA R:ALA135 4.5 52.3 1.0 CA R:PRO136 4.6 55.1 1.0 O R:ASP168 4.6 60.5 1.0 O R:HOH414 4.6 48.2 1.0 N R:PHE164 4.6 51.2 1.0 N R:VAL163 4.6 55.9 1.0 CB R:SER165 4.6 46.6 1.0 CA R:VAL163 4.7 53.1 1.0 C R:PHE164 4.7 46.0 1.0 N R:PHE138 4.7 55.8 1.0 CA R:PHE138 4.7 54.3 1.0 CA R:SER165 4.8 46.9 1.0 N R:CYS134 4.9 45.9 1.0 CA R:SER161 5.0 47.1 1.0

C.Liu, Y.Zhao, W.He, W.Wang, Y.Chen, S.Zhang, Y.Ma, J.Gohda, T.Ishida, T.S.Walter, R.J.Owens, D.I.Stuart, J.Ren, B.Gao. A Rankl Mutant Used As An Inter-Species Vaccine For Efficient Immunotherapy of Osteoporosis. Sci Rep V. 5 14150 2015.
ISSN: ESSN 2045-2322
PubMed: 26412210
DOI: 10.1038/SREP14150