Sodium in PDB 5bnh: Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment

The structure of Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment, PDB code: 5bnh was solved by D.Neculai, J.R.Walker, J.Weigelt, C.Bountra, A.M.Edwards, C.H.Arrowsmith, S.Dhe-Paganon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.38 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.469, 50.117, 102.763, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 21.4

The binding sites of Sodium atom in the Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment (pdb code 5bnh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment, PDB code: 5bnh:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:23.9 occ:1.00 O A:HOH365 2.1 30.9 1.0 O A:HOH335 2.2 18.4 1.0 O A:TYR73 2.3 19.4 1.0 O A:HOH370 2.4 31.9 1.0 O A:LEU70 2.4 16.5 1.0 O A:HOH373 2.6 40.9 1.0 C A:TYR73 3.4 18.7 1.0 C A:LEU70 3.5 15.3 1.0 N A:TYR73 4.0 16.2 1.0 CA A:TYR73 4.2 17.8 1.0 CA A:LEU70 4.2 15.5 1.0 O A:GLY75 4.3 20.6 1.0 N A:THR74 4.3 19.6 1.0 CB A:LEU70 4.3 15.8 1.0 N A:ARG71 4.5 14.6 1.0 CA A:THR74 4.5 20.9 1.0 CA A:ARG71 4.6 17.9 1.0 CB A:TYR73 4.6 17.5 1.0 O A:VAL108 4.6 14.5 1.0 C A:THR74 4.6 18.9 1.0 C A:ARG71 4.7 16.3 1.0 O A:HOH316 4.8 29.7 1.0 N A:GLY75 4.9 18.5 1.0 O A:THR74 4.9 17.1 1.0 N A:TYR72 5.0 14.8 1.0 O A:ARG71 5.0 17.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:37.8 occ:1.00 OE1 A:GLN107 2.7 19.7 1.0 O4 A:PO4203 2.8 57.1 1.0 CB A:GLN107 3.5 18.5 1.0 P A:PO4203 3.6 41.6 1.0 O1 A:PO4203 3.6 41.2 1.0 O A:HOH319 3.6 35.4 1.0 O2 A:PO4203 3.7 45.5 1.0 CD A:GLN107 3.8 19.9 1.0 O A:HOH326 3.9 29.2 1.0 CD1 A:TYR73 4.0 18.6 1.0 CE1 A:TYR73 4.0 17.9 1.0 CG A:GLN107 4.2 18.2 1.0 O A:HOH303 4.5 38.9 1.0 O A:HOH310 4.8 39.8 1.0 CA A:GLN107 4.8 16.8 1.0 N A:GLN107 4.8 18.3 1.0 NE2 A:GLN107 4.9 19.9 1.0

D.Neculai, J.R.Walker, J.Weigelt, C.Bountra, A.M.Edwards, C.H.Arrowsmith, S.Dhe-Paganon. Co-Crystal Structure of the Hltf Hiran Domain with A Ssdna Fragment To Be Published.