Sodium in PDB, part 123 (files: 4881-4920),
PDB 4r3w-4rmj
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 4881-4920 (PDB 4r3w-4rmj).
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4r3w (Na: 3) - Crystal Structure Analysis of the 1,2,3-Tricarboxylate Benzoic Acid Bound to Sp-Asadh-2'5'-Adp Complex
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4r41 (Na: 3) - Complex Crystal Structure of 4-Nitro-2-Phosphono-Benzoic Acid with Sp- Aspartate-Semialdehyde Dehydrogenase and Nicotinamide-Dinucleotide
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4r44 (Na: 4) - Racemic Crystal Structure of A Tetramolecular Dna G-Quadruplex
Other atoms:
K (14);
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4r48 (Na: 1) - Racemic Crystal Structure of A Calcium-Bound Dna Four-Way Junction
Other atoms:
Ca (1);
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4r49 (Na: 2) - Racemic Crystal Structure of A Calcium-Bound B-Dna Duplex
Other atoms:
Ca (7);
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4r4d (Na: 1) - Racemic Crystal Structure of A Magnesium-Bound B-Dna Duplex
Other atoms:
Mg (8);
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4r4j (Na: 2) - Crystal Structure of Complex SP_ASADH with 3-Carboxypropyl-Phthalic Acid and Nicotinamide Adenine Dinucleotide Phosphate
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4r4u (Na: 2) - Crystal Structure of Acyl-Coa Thioesterase Tesb From Yersinia Pestis in Complex with Coenzyme A
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4r51 (Na: 3) - Crystal Complex Structure of Sp-Aspartate-Semialdehyde-Dehydrogenase with Nicotinamide Adenine Dinucleotide Phosphate and Phthalic Acid
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4r54 (Na: 3) - Complex Crystal Structure of Sp-Aspartate-Semialdehyde-Dehydrogenase with 3-Carboxy-Ethyl-Phthalic Acid
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4r5h (Na: 2) - Crystal Structure of Sp-Aspartate-Semialdehyde-Dehydrogenase with Nicotinamide-Adenine-Dinucleotide-Phosphate and 3-Carboxy-Propenyl- Phthalic Acid
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4r5m (Na: 1) - Crystal Structure of Vc-Aspartate Beta-Semialdehyde-Dehydrogenase with Nadp and 4-Nitro-2-Phosphono-Benzoic Acid
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4r60 (Na: 2) - Crystal Structure of Xaa-Pro Dipeptidase From Xanthomonas Campestris
Other atoms:
Mn (4);
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4r63 (Na: 4) - Binary Complex Crystal Structure of R258A Mutant of Dna Polymerase Beta
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4r64 (Na: 2) - Binary Complex Crystal Structure of E295K Mutant of Dna Polymerase Beta
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4r65 (Na: 2) - Ternary Complex Crystal Structure of R258A Mutant of Dna Polymerase Beta
Other atoms:
Mg (2);
Cl (6);
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4r66 (Na: 2) - Ternary Complex Crystal Structure of E295K Mutant of Dna Polymerase Beta
Other atoms:
Mn (4);
Cl (3);
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4r6c (Na: 2) - X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Other atoms:
Br (31);
Pt (2);
Ta (12);
Cl (12);
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4r6k (Na: 1) - Crystal Structure of Abc Transporter Substrate-Binding Protein Yeso From Bacillus Subtilis, Target Efi-510761, An Open Conformation
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4r7u (Na: 5) - Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Vibrio Cholerae in Complex with Substrate Udp-N-Acetylglucosamine and the Drug Fosfomycin
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4r8i (Na: 1) - High Resolution Structure of A Mirror-Image Rna Oligonucleotide Aptamer in Complex with the Chemokine CCL2
Other atoms:
Sr (1);
K (5);
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4r9i (Na: 1) - Crystal Structure of Cysteine Proteinase Inhibitor SERPIN18 From Bombyx Mori
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4ra5 (Na: 1) - Human Protein Kinase C Theta in Complex with Ligand Compound 11A (6- [(1,3-Dimethyl-Azetidin-3-Yl)-Methyl-Amino]-4(R)-Methyl-7-Phenyl-2, 10-Dihydro-9-Oxa-1,2,4A-Triaza-Phenanthren-3-One)
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4rai (Na: 7) - Crystal Structure of Cng Mimicking Nak-Etpp Mutant in Complex with Na+
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4ras (Na: 3) - Reductive Dehalogenase Structure Suggests A Mechanism For B12- Dependent Dehalogenation
Other atoms:
Co (3);
Fe (24);
Cl (3);
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4rbm (Na: 3) - Porphyromonas Gingivalis Gingipain K (Kgp) Catalytic and Immunoglobulin Superfamily-Like Domains
Other atoms:
Ni (1);
Ca (2);
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4rcx (Na: 1) - Trichomonas Vaginalis Triosephosphate Isomerase TVAG_497370 Gene (Ile- 45 Variant) Loop 3 Deletion Protein
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4rds (Na: 3) - Lysozyme Crystallized with Red Food Coloring Dye
Other atoms:
Cl (3);
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4rfl (Na: 1) - Crystal Structure of G1PDH with Nadph From Methanocaldococcus Jannaschii
Other atoms:
K (4);
Zn (4);
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4rgu (Na: 1) - Crystal Structure of Putative Marr Family Transcriptional Regulator Hcar From Acinetobacter Sp. Adp Complexed with Ferulic Acid
Other atoms:
Cl (2);
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4rhb (Na: 1) - Crystal Structure of the Lipopolysaccharide Assembly Complex Lptd-Lpte From the Escherichia Coli Outer Membrane
Other atoms:
Cl (4);
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4riz (Na: 3) - The Crystal Structure of Y333Q Mutant Pyridoxal-Dependent Decarboxylase From Sphaerobacter Thermophilus Dsm 20745
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4rj1 (Na: 4) - Structural Variations and Solvent Structure of Uggggu Quadruplexes Stabilized By SR2+ Ions
Other atoms:
Sr (5);
Ca (3);
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4rjl (Na: 2) - Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp
Other atoms:
Mg (2);
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4rjy (Na: 6) - Crystal Structure of E. Coli L-Threonine Aldolase in Complex with A Non-Covalently Uncleaved Bound L-Serine Substrate
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4rk4 (Na: 1) - Crystal Structure of Laci Family Transcriptional Regulator From Lactobacillus Casei, Target Efi-512911, with Bound Glucose
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4rk5 (Na: 1) - Crystal Structure of Laci Family Transcriptional Regulator From Lactobacillus Casei, Target Efi-512911, with Bound Sucrose
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4rko (Na: 1) - Crystal Structure of Thrombin Mutant S195T Bound with Ppack
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4rkv (Na: 4) - Structural Variations and Solvent Structure of Uggggu Quadruplexes Stabilized By SR2+ Ions
Other atoms:
Sr (6);
Ca (2);
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4rmj (Na: 1) - Human SIRT2 in Complex with Adp Ribose and Nicotinamide
Other atoms:
Zn (2);
Page generated: Thu Dec 28 11:20:35 2023
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