Sodium in PDB 4rk4: Crystal Structure of Laci Family Transcriptional Regulator From Lactobacillus Casei, Target Efi-512911, with Bound Glucose

The structure of Crystal Structure of Laci Family Transcriptional Regulator From Lactobacillus Casei, Target Efi-512911, with Bound Glucose, PDB code: 4rk4 was solved by Y.Patskovsky, R.Toro, R.Bhosle, N.Al Obaidi, S.Chamala, J.D.Attonito, A.Scott Glenn, S.Chowdhury, J.Lafleur, R.D.Siedel, B.Hillerich, J.Love, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.32
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	108.854, 108.854, 125.885, 90.00, 90.00, 120.00
R / Rfree (%)	12.6 / 15.2

The binding sites of Sodium atom in the Crystal Structure of Laci Family Transcriptional Regulator From Lactobacillus Casei, Target Efi-512911, with Bound Glucose (pdb code 4rk4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Laci Family Transcriptional Regulator From Lactobacillus Casei, Target Efi-512911, with Bound Glucose, PDB code: 4rk4:

Sodium binding site 1 out of 1 in the Crystal Structure of Laci Family Transcriptional Regulator From Lactobacillus Casei, Target Efi-512911, with Bound Glucose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Laci Family Transcriptional Regulator From Lactobacillus Casei, Target Efi-512911, with Bound Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:25.4 occ:1.00 O A:HOH755 2.3 34.0 1.0 O A:HOH756 2.4 41.8 1.0 O A:HOH705 2.4 49.2 1.0 O A:HOH537 2.5 28.0 1.0 O A:HOH659 2.5 47.5 1.0 O A:HOH571 2.5 30.1 1.0 O A:ASP269 2.5 28.9 1.0 C A:ASP269 3.7 27.1 1.0 O A:ASP270 4.2 24.9 1.0 CE1 A:HIS176 4.4 25.2 1.0 C A:ASP270 4.4 23.5 1.0 O A:HOH700 4.5 46.6 1.0 O A:PRO268 4.5 24.4 1.0 ND1 A:HIS176 4.5 25.2 1.0 CA A:ASP270 4.5 24.0 1.0 N A:ASP270 4.6 23.8 1.0 CA A:ASP269 4.6 27.2 1.0 OD1 A:ASP243 4.9 29.3 1.0

Y.Patskovsky, R.Toro, R.Bhosle, N.Al Obaidi, S.Chamala, A.Scott Glenn, J.D.Attonito, S.Chowdhury, J.Lafleur, R.D.Siedel, B.Hillerich, J.Love, K.L.Whalen, J.A.Gerlt, S.C.Almo. Crystal Structure of Laci Transcriptional Regulator LSEI_2103 From Lactobacillus Casei, Target Efi-512911 To Be Published.