Sodium in PDB, part 236 (files: 9401-9440),
PDB 7apy-7b7n
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9401-9440 (PDB 7apy-7b7n).
-
7apy (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, D576A
Other atoms:
Cu (12);
Cl (3);
Ca (2);
K (2);
-
7aq0 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, D576A/S550A
Other atoms:
Ca (2);
K (2);
Cu (12);
Cl (2);
-
7aq2 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583A
Other atoms:
Ca (1);
K (1);
Cu (6);
Cl (3);
Zn (2);
-
7aq3 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583D
Other atoms:
K (1);
Ca (1);
Zn (2);
Cl (2);
Cu (8);
-
7aq4 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583E
Other atoms:
Cu (8);
Cl (2);
Zn (2);
Ca (2);
K (1);
-
7aq5 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583N
Other atoms:
Zn (2);
Cl (3);
Cu (8);
K (1);
Ca (2);
-
7aq6 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583F
Other atoms:
Cu (12);
Cl (2);
Ca (2);
K (2);
-
7aq7 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583Y
Other atoms:
Cl (3);
Cu (12);
K (2);
Ca (2);
-
7aq8 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583Y/D576A
Other atoms:
K (2);
Ca (2);
Zn (2);
Cl (2);
Cu (8);
-
7aq9 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H583W
Other atoms:
Ca (1);
K (1);
Cu (6);
Cl (3);
Zn (2);
-
7aqa (Na: 1) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H382A
Other atoms:
Ca (2);
K (2);
Cu (11);
Cl (3);
-
7aqx (Na: 2) - Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in Complex with Nanobody VSG2(NB9)
-
7aqz (Na: 2) - Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in Complex with Nanobody VSG2(NB14)
-
7aro (Na: 1) - Crystal Structure of the Non-Ribose Partial Agonist LUF5833 Bound to the Adenosine A2A Receptor
-
7asj (Na: 1) - Crystal Structure For the Complex of Human Carbonic Anhydrase II and 3-(3-Methyl-3-Phenethylureido)Benzenesulfonamide
Other atoms:
Zn (1);
-
7asq (Na: 1) - Orotidine 5'-Monophosphate Decarboxylase-Domain of Human Umps in Complex with the Reaction Product Ump at 0.95 Angstrom Resolution
-
7at6 (Na: 5) - Structure of Thaumatin Collected By Femtosecond Serial Crystallography on A Coc Membrane
-
7at9 (Na: 2) - Structure of Protein Kinase CK2 Catalytic Subunit (CSNK2A2 Gene Product) in Complex with the Atp-Competitive Inhibitor MB002 and the Alphad-Pocket Ligand 3,4-Dichlorophenethylamine
Other atoms:
Br (8);
Cl (6);
-
7auw (Na: 2) - Inhibitory Complex of Human Meprin Beta with Mouse Fetuin-B.
Other atoms:
Zn (2);
-
7avq (Na: 1) - Crystal Structure of Haspin in Complex with Disubstituted Imidazo[1,2- B]Pyridazine Inhibitor (Compound 12)
-
7aw7 (Na: 2) - Ccaat-Binding Complex and Hapx Bound to Aspergillus Nidulans Ccca Dna
Other atoms:
Cl (1);
-
7awe (Na: 13) - Human Immunoproteasome 20S Particle in Complex with [(1R)-2-(1- Benzofuran-3-Yl)-1-{[(1S,2R,4R)-7-Oxabicyclo[2.2.1]Heptan-2- Yl]Formamido}Ethyl]Boronic Acid
-
7awh (Na: 1) - Crystal Structure of Human Butyrylcholinesterase in Complex with Tert- Butyl 3-(((2-((1-(Benzenesulfonyl)-1H-Indol-4-Yl)Oxy)Ethyl)Amino) Methyl)Piperidine-1-Carboxylate
-
7awm (Na: 3) - Structure of the Thermostabilized EAAT1 Cryst Mutant in Complex with L-Asp, Three Sodium Ions and the Allosteric Inhibitor UCPH101
Other atoms:
Ba (1);
-
7awq (Na: 2) - Structure of the Thermostabilized EAAT1 Cryst-E386Q Mutant in Complex with L-Asp, Sodium Ions and the Allosteric Inhibitor UCPH101
Other atoms:
Ba (1);
-
7ax2 (Na: 1) - Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B
Other atoms:
Si (2);
W (23);
-
7b02 (Na: 1) - Thioredoxin Glutathione Reductase From Schistosoma Mansoni in Complex with 4-Hydroxy-7-Methyl-1,8-Naphthyridine-3-Carboxylic Acid
Other atoms:
K (1);
Cl (1);
-
7b12 (Na: 6) - Human Immunoproteasome 20S Particle in Complex with [2-(3- Ethylphenyl)-1-[(2S)-3-Phenyl-2-[(Pyrazin-2-Yl) Formamido]Propanamido]Ethyl]Boronic Acid
-
7b1k (Na: 2) - Crystal Structure of Phosphatidyl Serine Synthase (Pss) in the Closed Conformation with Bound Citrate.
Other atoms:
Mg (2);
Ca (2);
Cl (4);
-
7b1l (Na: 2) - Crystal Structure of Phosphatidyl Serine Synthase (Pss) in the Closed Conformation with Bound Citrate.
Other atoms:
Cl (6);
Mg (2);
Ca (2);
-
7b2c (Na: 5) - Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon
Other atoms:
Mg (1);
K (17);
Ni (2);
Xe (16);
Cl (5);
-
7b3e (Na: 1) - Crystal Structure of Myricetin Covalently Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2
Other atoms:
Cl (1);
-
7b3n (Na: 2) - Amip Amidase-3 From Thermus Parvatiensis
Other atoms:
Cl (2);
Zn (5);
-
7b3r (Na: 1) - Oxa-10 Beta-Lactamase with S64DHA Modification and Lysinoalanine Crosslink
-
7b3s (Na: 3) - Oxa-10 Beta-Lactamase with S67DHA Modification
-
7b3u (Na: 2) - Oxa-10 Beta-Lactamase with Covalent Modification
-
7b4l (Na: 2) - Cryoem Structure of the Human Sodium Proton Exchanger NHA2
-
7b4w (Na: 2) - Broadly Neutralizing Darpin Bnd.3 in Complex with the Hiv-1 Envelope Variable Loop 3 Crown Mimetic Peptide V3-if (BG505)
Other atoms:
Ca (2);
-
7b7h (Na: 2) - The Glucuronoyl Esterase OTCE15A R268A Variant From Opitutus Terrae in Complex with, and Covalently Linked to, D-Glucuronate
-
7b7n (Na: 10) - Human Herpesvirus-8 Gh/Gl in Complex with EPHA2
Other atoms:
Cl (4);
Page generated: Sat Aug 23 06:30:19 2025
|
