Sodium in PDB, part 227 (files: 9041-9080),
PDB 6w26-6wo2
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9041-9080 (PDB 6w26-6wo2).
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6w26 (Na: 2) - Terpenoid Cyclase Fggs in Complex with Mg, Inorganic Pyrophosphate, and Imidazole
Other atoms:
Mg (6);
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6w2m (Na: 2) - Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
Other atoms:
Mg (2);
Cl (2);
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6w3l (Na: 2) - APE1 Exonuclease Substrate Complex Wild-Type
Other atoms:
Ca (1);
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6w3o (Na: 3) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with 4-Methylisoleucine
Other atoms:
Cl (1);
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6w3p (Na: 2) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with Beta-Methylnorleucine
Other atoms:
Cl (5);
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6w3q (Na: 1) - APE1 Exonuclease Substrate Complex L104R
Other atoms:
Ca (1);
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6w3r (Na: 3) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with 3-Methylisoleucine
Other atoms:
Cl (3);
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6w3u (Na: 1) - APE1 Exonuclease Substrate Complex R237C
Other atoms:
Ca (1);
Cl (1);
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6w3v (Na: 1) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with L-Phenylalanine
Other atoms:
Cl (2);
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6w4u (Na: 2) - Crystal Structure of Triosephosphate Isomerase From Stenotrophomonas Maltophilia K279A
Other atoms:
Cl (2);
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6w75 (Na: 7) - 1.95 Angstrom Resolution Crystal Structure of NSP10 - NSP16 Complex From Sars-Cov-2
Other atoms:
Zn (4);
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6w7g (Na: 1) - Structure of Eed Bound to Inhibitor 1056
Other atoms:
F (2);
-
6w7p (Na: 1) - Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment
Other atoms:
Cl (4);
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6w9p (Na: 1) - TEL26 Parallel Four-Quartet G-Quadruplex with K+
Other atoms:
K (3);
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6wb7 (Na: 4) - Acarbose Kinase Acbk As A Complex with Acarbose and Amp-Pnp
Other atoms:
Mn (5);
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6wdu (Na: 2) - The External Aldimine Form of the Salmonella Thypi Wild-Type Tryptophan Synthase in Open Conformation Showing Multiple Side Chain Conformations For the Residue Beta Q114 and Sodium Ion at the Metal Coordination Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring.
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6we5 (Na: 3) - Crystal Structure of An Inorganic Pyrophosphatase From Chlamydia Trachomatis D/Uw-3/Cx
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6wea (Na: 2) - Yth Domain of Human YTHDC1 with A 10MER Oligo Containing N6MA
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6wej (Na: 1) - Structure of Cgmp-Unbound Wt Tax-4 Reconstituted in Lipid Nanodiscs
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6wel (Na: 1) - Structure of Cgmp-Unbound F403V/V407A Mutant Tax-4 Reconstituted in Lipid Nanodiscs
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6wgo (Na: 1) - The Interaction of Dichlorido(3-(Anthracen-9-Ylmethyl)-1- Methylimidazol-2-Ylidene)(ETA6-P-Cymene)Ruthenium(II) with Hewl After 1 Week
Other atoms:
Ru (1);
Cl (2);
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6whn (Na: 6) - Histone Deacetylases Complex with Peptide Macrocycles
Other atoms:
Zn (3);
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6who (Na: 6) - Histone Deacetylases Complex with Peptide Macrocycles
Other atoms:
Zn (3);
-
6whq (Na: 6) - Histone Deacetylases Complex with Peptide Macrocycles
Other atoms:
Zn (3);
-
6whz (Na: 5) - Histone Deacetylases Complex with Peptide Macrocycles
Other atoms:
Zn (3);
-
6wi3 (Na: 6) - Histone Deacetylases Complex with Peptide Macrocycles
Other atoms:
Zn (3);
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6wic (Na: 1) - Pre-Catalytic Quaternary Complex of Human Polymerase Mu on A Complementary Dna Double-Strand Break Substrate
Other atoms:
Mg (2);
K (1);
Cl (1);
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6wid (Na: 1) - Nucleotide Incorporation Intermediate Into Quaternary Complex of Human Polymerase Mu on A Complementary Dna Double-Strand Break Substrate
Other atoms:
Mg (2);
Cl (1);
-
6wie (Na: 2) - Post-Catalytic Nicked Complex of Human Polymerase Mu on A Complementary Dna Double-Strand Break Substrate
Other atoms:
Mg (2);
Cl (1);
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6wjo (Na: 2) - Crystal Structure of Wild-Type Arginine Repressor From the Pathogenic Bacterium Corynebacterium Pseudotuberculosis Bound to Tyrosine
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6wjt (Na: 2) - 2.0 Angstrom Resolution Crystal Structure of NSP16-NSP10 Heterodimer From Sars-Cov-2 in Complex with S-Adenosyl-L-Homocysteine
Other atoms:
Zn (4);
-
6wjz (Na: 2) - Crystal Structure of Human Ribokinase in Complex with Ampcp
Other atoms:
Mg (2);
-
6wk0 (Na: 8) - Crystal Structure of Human Ribokinase in Complex with Amppcp and Ribose
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6wk2 (Na: 1) - SETD3 Mutant (N255V) in Complex with An Actin Peptide with HIS73 Replaced with Methionine
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6wkq (Na: 4) - 1.98 Angstrom Resolution Crystal Structure of NSP16-NSP10 Heterodimer From Sars-Cov-2 in Complex with Sinefungin
Other atoms:
Zn (4);
-
6wm5 (Na: 7) - Structure of A Phosphatidylinositol-Phosphate Synthase (Pips) From Mycobacterium Kansasii
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6wmv (Na: 4) - Structure of A Phosphatidylinositol-Phosphate Synthase (Pips) From Mycobacterium Kansasii with Evidence of Substrate Binding
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6wn2 (Na: 4) - Tyrosyl T-Rna Synthetase Mutant From E.Coli Complexed with Sulfotyrosine
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6wnx (Na: 2) - FBXW11-SKP1 in Complex with A PSER33/PSER37 Beta-Catenin Peptide
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6wo2 (Na: 1) - Crystal Structure of the GRB2 SH2 Domain in Complex with A Tripeptide: Ac-Py-AC6C-N-Isohexyl
Other atoms:
Ca (1);
Page generated: Sat Aug 23 06:29:58 2025
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