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Sodium in PDB 6w2m: Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
Enzymatic activity of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
All present enzymatic activity of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da, PDB code: 6w2m
was solved by
V.K.Batra,
S.H.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 23.93 / 2.00 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 50.751, 80.462, 55.612, 90.00, 107.75, 90.00 |
| R / Rfree (%) | 19.3 / 23.8 |
Other elements in 6w2m:
The structure of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Chlorine | (Cl) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
(pdb code 6w2m). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da, PDB code: 6w2m:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da, PDB code: 6w2m:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 6w2m
Go back to
Sodium Binding Sites List in 6w2m
Sodium binding site 1 out
of 2 in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da within 5.0Å range:
|
Sodium binding site 2 out of 2 in 6w2m
Go back to
Sodium Binding Sites List in 6w2m
Sodium binding site 2 out
of 2 in the Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da within 5.0Å range:
|
Reference:
V.K.Batra,
S.H.Wilson.
Structure of A Dna Polymerase Abortive Complex with the 8OG:Da Base Pair at the Primer Terminus. Commun Biol V. 3 348 2020.
ISSN: ESSN 2399-3642
PubMed: 32620932
DOI: 10.1038/S42003-020-1080-4
Page generated: Mon Aug 18 08:01:17 2025
ISSN: ESSN 2399-3642
PubMed: 32620932
DOI: 10.1038/S42003-020-1080-4
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