Sodium in PDB 8eu0: Ancestral Petase 35_442 Mutant E27Q

The structure of Ancestral Petase 35_442 Mutant E27Q, PDB code: 8eu0 was solved by J.W.Saunders, R.L.Frkic, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.07 / 2.06
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	68.372, 68.372, 214.014, 90, 90, 120
R / Rfree (%)	18.9 / 22.7

The binding sites of Sodium atom in the Ancestral Petase 35_442 Mutant E27Q (pdb code 8eu0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 5 binding sites of Sodium where determined in the Ancestral Petase 35_442 Mutant E27Q, PDB code: 8eu0:
Jump to Sodium binding site number: 1; 2; 3; 4; 5;

Sodium binding site 1 out of 5 in the Ancestral Petase 35_442 Mutant E27Q


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ancestral Petase 35_442 Mutant E27Q within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:47.5 occ:1.00 O A:PRO246 2.2 45.8 1.0 O A:ILE252 2.3 44.6 1.0 O A:HOH475 2.3 53.5 1.0 O A:ASP249 2.3 49.0 1.0 O A:HOH504 2.5 54.8 1.0 O A:HOH485 2.5 44.6 1.0 C A:PRO246 3.4 48.8 1.0 C A:ASP249 3.4 46.6 1.0 C A:ILE252 3.5 42.6 1.0 CA A:SER250 4.0 51.7 1.0 N A:SER250 4.1 50.0 1.0 N A:HIS247 4.2 49.7 0.4 N A:HIS247 4.2 49.7 0.6 CA A:HIS247 4.2 52.1 0.6 CA A:HIS247 4.2 52.2 0.4 CA A:PRO246 4.2 44.5 1.0 C A:SER250 4.3 49.9 1.0 N A:ILE252 4.3 42.0 1.0 N A:ASP249 4.3 48.8 1.0 N A:SER253 4.4 40.5 1.0 CA A:SER253 4.4 41.4 1.0 O A:SER250 4.4 50.7 1.0 CA A:ILE252 4.4 39.6 1.0 CA A:ASP249 4.5 46.7 1.0 C A:HIS247 4.6 53.6 0.4 CB A:PRO246 4.6 39.1 1.0 C A:HIS247 4.6 53.6 0.6 N A:ALA251 4.9 48.0 1.0 O A:HIS247 4.9 56.5 0.4 CB A:ILE252 4.9 42.7 1.0 N A:ASP248 5.0 50.8 1.0 O A:HIS247 5.0 56.5 0.6

Sodium binding site 2 out of 5 in the Ancestral Petase 35_442 Mutant E27Q


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Ancestral Petase 35_442 Mutant E27Q within 5.0Å range: probe atom residue distance (Å) B Occ A:Na303 b:54.5 occ:1.00 O A:ARG33 2.4 54.2 1.0 O A:HOH503 2.4 57.5 1.0 O A:PHE39 2.4 46.3 1.0 O A:ALA36 2.5 60.7 1.0 O A:HOH512 2.6 60.5 1.0 C A:PHE39 3.5 46.0 1.0 C A:ARG33 3.6 49.0 1.0 C A:ALA36 3.7 56.0 1.0 CA A:GLY40 4.0 43.6 1.0 CB A:ALA36 4.1 46.6 1.0 CG A:ARG33 4.2 56.5 1.0 OD1 A:ASN91 4.2 48.7 1.0 N A:GLY40 4.2 40.3 1.0 CA A:ALA36 4.3 53.0 1.0 N A:PHE39 4.4 42.2 1.0 CA A:ARG33 4.4 44.4 1.0 N A:ALA36 4.4 60.5 1.0 N A:LEU34 4.5 48.4 1.0 CA A:PHE39 4.6 43.0 1.0 O A:HOH518 4.6 56.5 1.0 CA A:LEU34 4.6 50.9 1.0 O A:LEU34 4.7 69.2 1.0 C A:LEU34 4.7 60.4 1.0 N A:SER37 4.7 60.8 1.0 C A:GLY40 4.8 46.8 1.0 N A:GLY41 4.8 45.3 1.0 N A:GLY38 4.8 51.4 1.0 CB A:ARG33 4.9 48.8 1.0

Sodium binding site 3 out of 5 in the Ancestral Petase 35_442 Mutant E27Q


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Ancestral Petase 35_442 Mutant E27Q within 5.0Å range: probe atom residue distance (Å) B Occ B:Na302 b:44.9 occ:1.00 O B:PRO246 2.3 52.0 1.0 O B:ASP249 2.3 47.1 1.0 O B:HOH486 2.4 47.0 1.0 O B:HOH463 2.4 51.3 1.0 O B:ILE252 2.5 46.9 1.0 O A:HOH466 2.6 53.4 1.0 C B:ASP249 3.3 46.0 1.0 C B:PRO246 3.4 51.1 1.0 O A:HOH461 3.5 55.9 1.0 C B:ILE252 3.6 46.3 1.0 CA B:SER250 3.8 47.3 1.0 N B:SER250 3.9 43.5 1.0 C B:SER250 4.0 46.2 1.0 O B:SER250 4.1 46.0 1.0 N B:ILE252 4.3 41.0 1.0 N B:ASP249 4.3 52.2 1.0 CA B:HIS247 4.3 51.9 0.5 N B:HIS247 4.3 50.8 0.5 CA B:HIS247 4.3 52.0 0.5 N B:HIS247 4.3 50.9 0.5 CA B:PRO246 4.4 46.6 1.0 CA B:ASP249 4.4 47.9 1.0 C B:HIS247 4.5 54.6 0.5 CA B:ILE252 4.5 40.0 1.0 O A:VAL26 4.5 52.5 1.0 N B:SER253 4.5 40.5 1.0 C B:HIS247 4.5 54.1 0.5 CA B:SER253 4.6 41.8 1.0 O B:HIS247 4.7 55.4 0.5 CB B:PRO246 4.8 44.7 1.0 N B:ALA251 4.8 43.4 1.0 O B:HIS247 4.8 55.5 0.5 CB B:ILE252 4.9 47.6 1.0 N B:ASP248 5.0 48.2 1.0

Sodium binding site 4 out of 5 in the Ancestral Petase 35_442 Mutant E27Q


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Ancestral Petase 35_442 Mutant E27Q within 5.0Å range: probe atom residue distance (Å) B Occ B:Na303 b:53.6 occ:1.00 O B:ARG33 2.3 53.6 1.0 O B:ALA36 2.4 52.4 1.0 O B:PHE39 2.6 45.8 1.0 O B:HOH499 2.9 55.5 1.0 O B:HOH484 3.3 49.9 1.0 C B:ARG33 3.6 57.1 1.0 C B:ALA36 3.6 57.4 1.0 C B:PHE39 3.7 47.7 1.0 CB B:ALA36 4.2 44.7 1.0 CA B:ALA36 4.2 57.2 1.0 CG B:ARG33 4.3 56.6 1.0 O B:LEU34 4.3 65.2 1.0 N B:ALA36 4.3 58.8 1.0 CA B:GLY40 4.3 49.5 1.0 N B:PHE39 4.4 42.8 1.0 OD1 B:ASN91 4.4 49.6 1.0 CA B:LEU34 4.5 61.2 1.0 CA B:ARG33 4.5 52.9 1.0 N B:LEU34 4.5 66.0 1.0 N B:GLY40 4.5 43.4 1.0 C B:LEU34 4.5 64.5 1.0 N B:SER37 4.6 51.0 1.0 CA B:PHE39 4.7 46.1 1.0 N B:GLY38 4.7 48.3 1.0 CA B:SER37 4.9 57.3 1.0 CB B:ARG33 5.0 51.5 1.0

Sodium binding site 5 out of 5 in the Ancestral Petase 35_442 Mutant E27Q


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Ancestral Petase 35_442 Mutant E27Q within 5.0Å range: probe atom residue distance (Å) B Occ B:Na304 b:55.6 occ:1.00 O B:HOH472 2.4 40.2 1.0 O B:PHE231 2.5 51.9 1.0 OD1 B:ASN234 2.7 47.2 1.0 O B:HOH476 3.0 52.4 1.0 CD B:LYS149 3.3 45.5 1.0 CG B:ASN234 3.7 47.1 1.0 C B:PHE231 3.7 43.3 1.0 CE B:LYS149 3.9 50.9 1.0 O B:HOH495 3.9 56.8 1.0 ND2 B:ASN234 4.0 51.1 1.0 CG B:LYS149 4.2 46.0 1.0 CA B:PHE231 4.3 46.8 1.0 CB B:LYS149 4.4 42.2 1.0 N B:VAL232 4.8 39.8 1.0 CB B:PHE231 4.8 42.0 1.0 O B:LYS149 4.9 40.1 1.0 CA B:LYS149 4.9 38.6 1.0 CA B:VAL232 5.0 40.1 1.0 CB B:ASN234 5.0 45.3 1.0

J.Saunders, R.L.Frkic, C.J.Jackson. Ancestral Petase 35_442 Mutant E27Q To Be Published.