Sodium in PDB, part 280 (files: 11161-11200),
PDB 8emk-8fbx
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11161-11200 (PDB 8emk-8fbx).
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8emk (Na: 2) - Crystal Structure of Hla-B*35:01-NP3 Epitope From 1957 H2N2 Influenza Strain
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8en9 (Na: 1) - Teha Native-Sad Structure Determined at 5 Kev with A Helium Environment
Other atoms:
Cl (2);
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8eng (Na: 2) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataagcggaagtggg) with Hemi-Methylated Cpg (Forward Strand)
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8eo1 (Na: 1) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataagcggaagtggg) with Hemi-Methylated Cpg (Reverse Strand)
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8eo4 (Na: 1) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataagcggaagtggg) with Di- Methylated Cpg Sites
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8eog (Na: 1) - Structure of the Human L-Type Voltage-Gated Calcium Channel CAV1.2 Complexed with L-Leucine
Other atoms:
Ca (3);
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8eqg (Na: 1) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataaa(Du)Ggaagtggg)
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8eqk (Na: 3) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataaccggaagtggg)
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8eql (Na: 2) - Human Pu.1 Ets-Domain (165-270) Q226E Mutant Bound to D(Aataaccggaagtggg)
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8esx (Na: 1) - Hiv Protease in Complex with Benzoxaborolone Analog of Darunavir
Other atoms:
Cl (3);
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8etk (Na: 4) - Bile Salt Hydrolase A From Lactobacillus Gasseri Bound to Covalent Probe
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8etx (Na: 2) - Ancestral Petase 55_547
Other atoms:
Cl (1);
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8ety (Na: 1) - Ancestral Petase 35_442
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8etz (Na: 1) - Ancestral Petase 35_442 Mutant E13D
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8eu0 (Na: 5) - Ancestral Petase 35_442 Mutant E27Q
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8eu1 (Na: 2) - Ancestral Petase 35_442 Mutant F93L
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8evy (Na: 1) - Ddlb From Pseudomonas Aeruginosa PAO1 in Complex with Atp and D-Ala-D- Ala
Other atoms:
Mg (6);
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8ewh (Na: 4) - Salmonella Typhimurium Gtpase Bipa
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8ewt (Na: 2) - Bile Salt Hydrolase A From Lactobacillus Gasseri Bound to Covalent Probe
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8ey3 (Na: 3) - Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37
Other atoms:
Fe (1);
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8eya (Na: 3) - Crystal Structure of PTP1B D181A/Q262A/C215A Phosphatase Domain with A JAK2 Activation Loop Phosphopeptide
Other atoms:
Cl (4);
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8eyp (Na: 1) - Joint X-Ray/Neutron Structure of Salmonella Typhimurium Tryptophan Synthase Internal Aldimine From Microgravity-Grown Crystal
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8ez4 (Na: 9) - Plasmodium Falciparum M17 in Complex with Inhibitor 9AA
Other atoms:
F (36);
Zn (24);
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8ezc (Na: 1) - X-Ray Crystal Structure of Salmonella Typhimurium Tryptophan Synthase Internal Aldimine
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8ezg (Na: 1) - Monobody 12D1 Bound to Kras(G12D)
Other atoms:
Mg (1);
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8ezo (Na: 2) - Lysozyme Anomalous Dataset at 220 K and 7.1 Kev
Other atoms:
Cl (10);
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8ezp (Na: 1) - Lysozyme Anomalous Dataset at 260 K and 7.1 Kev
Other atoms:
Cl (7);
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8ezu (Na: 2) - Lysozyme Anomalous Dataset at 273 K and 7.1 Kev
Other atoms:
Cl (11);
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8ezx (Na: 1) - Lysozyme Anomalous Dataset at 293 K and 7.1 Kev
Other atoms:
Cl (8);
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8f00 (Na: 1) - Lysozyme Anomalous Dataset at 293 K and 12 Kev
Other atoms:
Cl (10);
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8f0b (Na: 2) - Lysozyme Anomalous Dataset at 240 K and 7.1 Kev
Other atoms:
Cl (10);
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8f0f (Na: 1) - Hiv-1 Wild Type Protease with Grl-110-19A, A Chloroacetamide Derivative Based on Darunavir As P2' Group
Other atoms:
Cl (3);
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8f28 (Na: 1) - Lysozyme Structures From Single-Entity Crystallization Method Nanoac
Other atoms:
Cl (2);
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8f3t (Na: 3) - Crystal Structure of Penicillin Binding Protein 5 (PBP5) T485M T499I V629E Variant Apo Form From Enterococcus Faecium
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8f4s (Na: 1) - Crystal Structure of the Sars-Cov-2 2'-O-Methyltransferase with Compound 5A Bound to the Cryptic Pocket of NSP16
Other atoms:
Cl (2);
Zn (2);
F (3);
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8f4y (Na: 2) - Crystal Structure of Sars-Cov-2 2'-O-Methyltransferase in Complex with Compound 5A Covalently Bound to NSP16 and NSP10
Other atoms:
Cl (8);
F (12);
Zn (2);
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8f5a (Na: 1) - Crystal Structure of KS1 Tcr in Complex with Hla-B*57:01-TW10
Other atoms:
Cl (2);
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8f5t (Na: 8) - Rabbit Muscle Pyruvate Kinase in Complex with Sodium and Magnesium
Other atoms:
Mg (8);
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8f6b (Na: 2) - Crystal Structure of Murine POLG2 Hexamer Bound to Dna
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8fbx (Na: 2) - Selenosugar Synthase Senb From Variovorax Paradoxus
Other atoms:
Cl (2);
Page generated: Mon Dec 15 11:17:52 2025
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