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Sodium in PDB 8etz: Ancestral Petase 35_442 Mutant E13D

Protein crystallography data

The structure of Ancestral Petase 35_442 Mutant E13D, PDB code: 8etz was solved by J.W.Saunders, R.L.Frkic, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.71 / 1.68
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 69.533, 149.488, 55.634, 90, 90, 90
R / Rfree (%) 15.5 / 17.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Ancestral Petase 35_442 Mutant E13D (pdb code 8etz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ancestral Petase 35_442 Mutant E13D, PDB code: 8etz:

Sodium binding site 1 out of 1 in 8etz

Go back to Sodium Binding Sites List in 8etz
Sodium binding site 1 out of 1 in the Ancestral Petase 35_442 Mutant E13D


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ancestral Petase 35_442 Mutant E13D within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na311

b:22.7
occ:1.00
O A:ILE252 2.3 22.1 1.0
O A:HIS247 2.3 24.6 1.0
O A:HOH606 2.4 30.7 1.0
O A:HOH610 2.4 28.6 1.0
O A:HOH573 2.4 26.1 1.0
O A:ASP249 2.4 24.7 1.0
HA A:SER250 3.3 35.1 1.0
C A:HIS247 3.4 23.6 1.0
C A:ILE252 3.4 25.1 1.0
C A:ASP249 3.4 24.3 1.0
H A:ILE252 3.5 26.2 1.0
HA A:SER253 3.6 25.8 1.0
HA A:HIS247 3.7 26.9 1.0
HB2 A:HIS247 3.8 29.8 1.0
CA A:SER250 4.0 29.2 1.0
CA A:HIS247 4.0 22.4 1.0
HB A:ILE252 4.1 26.5 1.0
N A:ILE252 4.1 21.8 1.0
N A:SER250 4.1 28.4 1.0
C A:ASP248 4.2 27.6 1.0
C A:SER250 4.2 25.0 1.0
N A:ASP249 4.2 26.1 1.0
CA A:ILE252 4.3 21.2 1.0
N A:SER253 4.3 21.4 1.0
O A:HOH613 4.3 48.0 1.0
CA A:SER253 4.3 21.5 1.0
O A:SER250 4.4 29.0 1.0
N A:ASP248 4.4 26.5 1.0
HA A:ASP248 4.4 30.3 1.0
CB A:HIS247 4.4 24.8 1.0
CA A:ASP249 4.5 26.4 1.0
H A:ASP249 4.5 31.2 1.0
O A:ASP248 4.5 29.8 1.0
CA A:ASP248 4.6 25.2 1.0
CB A:ILE252 4.7 22.1 1.0
HG22 A:ILE252 4.8 27.8 1.0
C A:SER253 4.9 23.6 1.0
N A:ALA251 4.9 25.6 1.0
HB3 A:ASP249 4.9 35.4 1.0
H A:SER250 4.9 34.0 1.0

Reference:

J.Saunders, R.L.Frkic, C.J.Jackson. Ancestral Petase 35_442 Mutant E13D To Be Published.
Page generated: Mon Aug 18 14:03:12 2025

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