Sodium in PDB 9ngq: Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg

The binding sites of Sodium atom in the Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg (pdb code 9ngq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 6 binding sites of Sodium where determined in the Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg, PDB code: 9ngq:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6;

Sodium binding site 1 out of 6 in the Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:5.0 occ:1.00 NA A:NA403 4.8 30.0 1.0

Sodium binding site 2 out of 6 in the Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:30.0 occ:1.00 CZ E:PHE247 3.8 13.3 1.0 CZ C:PHE247 3.9 13.3 1.0 CZ D:PHE247 3.9 13.3 1.0 CZ B:PHE247 3.9 13.3 1.0 CZ A:PHE247 3.9 13.3 1.0 CE2 E:PHE247 4.5 13.3 1.0 CE2 C:PHE247 4.5 13.3 1.0 CE2 D:PHE247 4.5 13.3 1.0 CE2 B:PHE247 4.6 13.3 1.0 CE2 A:PHE247 4.6 13.3 1.0 CE1 E:PHE247 4.7 13.3 1.0 CE1 C:PHE247 4.7 13.3 1.0 CE1 D:PHE247 4.7 13.3 1.0 CE1 B:PHE247 4.7 13.3 1.0 CE1 A:PHE247 4.8 13.3 1.0 NA A:NA402 4.8 5.0 1.0

Sodium binding site 3 out of 6 in the Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:30.0 occ:1.00 CD2 E:LEU240 4.4 11.3 1.0 CD2 A:LEU240 4.5 11.3 1.0 CD2 B:LEU240 4.5 11.3 1.0 CD2 C:LEU240 4.5 11.3 1.0 CD2 D:LEU240 4.5 11.3 1.0 CG E:LEU240 4.9 11.3 1.0 CG A:LEU240 4.9 11.3 1.0 CG B:LEU240 4.9 11.3 1.0 CG C:LEU240 4.9 11.3 1.0 CG D:LEU240 5.0 11.3 1.0

Sodium binding site 4 out of 6 in the Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range: probe atom residue distance (Å) B Occ A:Na405 b:5.0 occ:1.00 NE2 E:GLN233 4.5 15.9 1.0 NE2 C:GLN233 4.5 15.9 1.0 NE2 D:GLN233 4.5 15.9 1.0 NE2 B:GLN233 4.5 15.9 1.0 NE2 A:GLN233 4.6 15.9 1.0 OG1 E:THR237 4.7 13.0 1.0 OG1 C:THR237 4.7 13.0 1.0 OG1 B:THR237 4.8 13.0 1.0 OG1 D:THR237 4.8 13.0 1.0 OG1 A:THR237 4.8 13.0 1.0

Sodium binding site 5 out of 6 in the Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range: probe atom residue distance (Å) B Occ B:Na402 b:10.2 occ:1.00 NA E:NA402 4.6 4.6 1.0

Sodium binding site 6 out of 6 in the Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Elic State 1 with Propylamine Facing Ecd Outwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range: probe atom residue distance (Å) B Occ E:Na402 b:4.6 occ:1.00 NA B:NA402 4.6 10.2 1.0

V.Dalal, B.K.Tan, H.Xu, W.W.Cheng. Cryo-Em Structures of A Pentameric Ligand-Gated Ion Channel in Liposomes Elife 2025.
ISSN: ESSN 2050-084X
DOI: 10.7554/ELIFE.106728.2