Sodium in PDB, part 219 (files: 8721-8760),
PDB 6s0u-6sfq
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 8721-8760 (PDB 6s0u-6sfq).
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6s0u (Na: 1) - The Crystal Structure of Kanamycin B Dioxygenase (Kanj) From Streptomyces Kanamyceticus in Complex with Nickel and 2-Oxoglutarate
Other atoms:
Ni (6);
Cl (2);
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6s16 (Na: 1) - T. Thermophilus Ruvc in Complex with Holliday Junction Substrate
Other atoms:
Cl (1);
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6s2t (Na: 1) - Structure of the N-Terminal Catalytic Region of T. Thermophilus Rel Bound to Ppgpp
Other atoms:
Mg (1);
Mn (1);
Cl (1);
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6s2v (Na: 1) - Structure of the N-Terminal Catalytic Region of T. Thermophilus Rel
Other atoms:
Mn (3);
Cl (6);
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6s36 (Na: 1) - Crystal Structure of E. Coli Adenylate Kinase R119K Mutant
Other atoms:
Mg (2);
Cl (3);
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6s3b (Na: 1) - Ligand Binding Domain of the P. Putida Receptor PCAY_PP in Complex with Benzoate
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6s4l (Na: 2) - Structure of Human KCTD1
Other atoms:
I (2);
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6s5w (Na: 1) - Structure of Rib Domain 'Rib Long' From Lactobacillus Acidophilus
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6s5x (Na: 2) - Structure of Ribr, the Most N-Terminal Rib Domain From Group B Streptococcus Species Streptococcus Agalactiae
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6s5z (Na: 2) - Structure of Rib R28N From Streptococcus Pyogenes
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6s63 (Na: 1) - Dark-Adapted Structure of Archaerhodopsin-3 Obtained From Lcp Crystals Using A Thin-Film Sandwich at Room Temperature
Other atoms:
Ca (1);
Cl (3);
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6s6c (Na: 1) - Ground State Structure of Archaerhodopsin-3 at 100K
Other atoms:
Ca (1);
Cl (3);
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6s6y (Na: 1) - X-Ray Crystal Structure of the Formyltransferase/Hydrolase Complex (Fhcabcd) From Methylorubrum Extorquens in Complex with Methylofuran
Other atoms:
K (9);
Zn (8);
Ca (6);
Cl (5);
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6s7d (Na: 2) - Self-Complementary Duplex Dna Containing An Internucleoside Phosphoroselenolate
Other atoms:
Ba (2);
Cl (1);
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6s7x (Na: 2) - DARC1 Capsid Domain Dimer, Orthorhombic Form at 1.7 Angstrom
Other atoms:
Cl (3);
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6s8z (Na: 1) - Elongation Factor P From Corynebacterium Glutamicum
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6s96 (Na: 1) - Crystal Structure of the Catalytic Domain of UBE2S C118A.
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6s98 (Na: 3) - Crystal Structure of the Catalytic Domain of UBE2S Wt.
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6s9z (Na: 2) - Expression Tag Modified N-Terminus of Human Carbonic Anhydrase II Covalently Linked to Fragment
Other atoms:
F (2);
Hg (2);
Zn (1);
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6sac (Na: 2) - N-Terminal Expression Tag Remainder of Human Carbonic Anhydrase II Covalently Modified By Fragment
Other atoms:
Hg (2);
Zn (1);
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6sau (Na: 1) - Structural and Functional Characterisation of Three Novel Fungal Amylases with Enhanced Stability and pH Tolerance
Other atoms:
Ca (2);
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6sb7 (Na: 2) - Human Carbonic Anhydrase II in Complex with Fragment.
Other atoms:
Hg (4);
Zn (1);
Cl (1);
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6sbc (Na: 2) - Structure of Type II Terpene Cyclase Mste From Scytonema in Complex with Farnesyl Dihydroxybenzoate
Other atoms:
Cl (4);
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6sbl (Na: 2) - Human Carbonic Anhydrase II in Complex with 4-Hexylbenzenesulfonamide
Other atoms:
Hg (2);
Zn (1);
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6sbm (Na: 2) - Human Carbonic Anhydrase II in Complex with 4-(Pentyloxy) Benzenesulfonamide
Other atoms:
Hg (2);
Zn (1);
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6sbn (Na: 1) - Polyester Hydrolase Pe-H of Pseudomonas Aestusnigri
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6sbq (Na: 2) - The Crystal Structure of Pfa-M1 in Complex with 7-Amino-4-Phenyl-5,7, 8,9-Tetrahydrobenzocyclohepten-6-One
Other atoms:
Zn (1);
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6sc4 (Na: 7) - Gamma-Carbonic Anhydrase From the Haloarchaeon Halobacterium Sp.
Other atoms:
Cd (13);
Zn (5);
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6scd (Na: 3) - Polyester Hydrolase Pe-H Y250S Mutant of Pseudomonas Aestusnigri
Other atoms:
Cl (3);
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6sdl (Na: 1) - Human Carbonic Anhydrase II in Complex with (R)-N-(3-(1H-Indol-1-Yl)- 2-Methylpropyl)-4-Sulfamoylbenzamide
Other atoms:
Hg (2);
Zn (1);
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6se8 (Na: 6) - Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB Mutant E441Q
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6se9 (Na: 2) - Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB Mutant E441Q in Complex with Lactose Bound in Shallow Mode
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6sea (Na: 4) - Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB Mutant E441Q in Complex with Lactose Bound in Deep Mode
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6seb (Na: 4) - Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB in Complex with Iptg
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6sec (Na: 1) - Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CBON Complex with Onpg
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6sed (Na: 3) - Cold-Adapted Beta-D-Galactosidase From Arthrobacter Sp. 32CB in Complex with Galactose
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6set (Na: 1) - X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 3 Days Exposure of Protein Crystals to Compound 1
Other atoms:
Au (5);
Cl (1);
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6sez (Na: 1) - X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 1
Other atoms:
Au (3);
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6sfo (Na: 1) - MAPK14 with Bound Inhibitor Sr-318
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6sfq (Na: 1) - Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with (R)-5-Phenyloxazolidine-2,4-Dione
Other atoms:
Hg (3);
Zn (1);
Page generated: Mon Dec 15 11:15:30 2025
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