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Sodium in PDB 6s8z: Elongation Factor P From Corynebacterium Glutamicum

Protein crystallography data

The structure of Elongation Factor P From Corynebacterium Glutamicum, PDB code: 6s8z was solved by S.Schneider, C.M.Scheidler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.58 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.201, 38.163, 55.356, 90.00, 93.09, 90.00
R / Rfree (%) 20.6 / 26.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Elongation Factor P From Corynebacterium Glutamicum (pdb code 6s8z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Elongation Factor P From Corynebacterium Glutamicum, PDB code: 6s8z:

Sodium binding site 1 out of 1 in 6s8z

Go back to Sodium Binding Sites List in 6s8z
Sodium binding site 1 out of 1 in the Elongation Factor P From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Elongation Factor P From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:57.8
occ:1.00
CE1 A:PHE80 3.7 29.0 1.0
CZ A:PHE80 3.9 28.9 1.0
ND2 A:ASN75 4.0 26.4 1.0
O A:GLY102 4.1 26.5 1.0
O A:HOH325 4.6 47.7 1.0
OH A:TYR72 4.7 24.4 1.0
O A:HOH302 4.7 36.3 1.0
CD1 A:PHE80 4.8 28.8 1.0
C A:GLY102 5.0 26.4 1.0

Reference:

C.M.Scheidler, S.Schneider, B.Pinheiro, K.Jung. Structure of the Elongation Factor P From Corynebacterium Glutamicum To Be Published.
Page generated: Tue Oct 8 13:23:56 2024

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