Sodium in PDB, part 140 (files: 5561-5600),
PDB 5cwy-5ddp
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 5561-5600 (PDB 5cwy-5ddp).
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5cwy (Na: 1) - Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryzae, in Complex with Fragment 83
Other atoms:
Cd (3);
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5cx7 (Na: 18) - Crystal Structure of Pduoc:Heme Complex
Other atoms:
Mg (2);
Fe (8);
Cl (4);
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5cxb (Na: 1) - Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P21 21 2 Space Group
Other atoms:
Cl (1);
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5cxj (Na: 1) - Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
Other atoms:
Cd (4);
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5cxp (Na: 7) - X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum
Other atoms:
Cl (16);
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5cy7 (Na: 1) - Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
Other atoms:
F (2);
Cd (3);
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5cy8 (Na: 1) - Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 244
Other atoms:
Cd (3);
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5czg (Na: 2) - Crystal Structure Analysis of Hypothetical Bromodomain TB427.10.7420 From Trypanosoma Brucei in Complex with Bromosporine
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5czz (Na: 5) - Crystal Structure of Staphylococcus Aureus CAS9 in Complex with Sgrna and Target Dna (Ttgaat Pam)
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5d18 (Na: 1) - Crystal Structure of Mycobacterium Tuberculosis RV0302, Form I
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5d26 (Na: 1) - First Bromodomain of BRD4 Bound to Inhibitor XD28
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5d3d (Na: 1) - Crystal Structure of Staphylococcal Superantigen-Like Protein 3
Other atoms:
Cl (4);
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5d3t (Na: 1) - First Bromodomain of BRD4 Bound to Inhibitor XD47
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5d46 (Na: 1) - Structural Basis For A New Templated Activity By Terminal Deoxynucleotidyl Transferase: Implications For V(D)J Recombination
Other atoms:
Mg (1);
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5d49 (Na: 1) - Structural Basis For A New Templated Activity By Terminal Deoxynucleotidyl Transferase: Implications For V(D)J Recombination
Other atoms:
Mg (1);
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5d4b (Na: 2) - Structural Basis For A New Templated Activity By Terminal Deoxynucleotidyl Transferase: Implications For V(D)J Recombination
Other atoms:
Mg (2);
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5d4f (Na: 3) - Crystal Structure of C-As Lyase with Fe(III)
Other atoms:
Fe (1);
Cl (1);
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5d5c (Na: 1) - In Meso in Situ Serial X-Ray Crystallography Structure of Lysozyme at 100 K
Other atoms:
Br (7);
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5d5d (Na: 2) - In Meso in Situ Serial X-Ray Crystallography Structure of Alge at 100 K
Other atoms:
Ca (1);
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5d5f (Na: 1) - In Meso in Situ Serial X-Ray Crystallography Structure of Lysozyme By Bromine-Sad at 100 K
Other atoms:
Br (7);
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5d5s (Na: 1) - Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant
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5d61 (Na: 1) - Moa-Z-Vad-Fmk Complex, Direct Orientation
Other atoms:
Cl (1);
Ca (2);
-
5d63 (Na: 1) - Moa-Z-Vad-Fmk Inhibitor Complex, Direct/Inverted Dual Orientation
Other atoms:
Cl (3);
Ca (2);
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5d6a (Na: 1) - 2.7 Angstrom Crystal Structure of Abc Transporter Atpase From Vibrio Vulnificus in Complex with Adenylyl-Imidodiphosphate (Amp-Pnp)
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5d74 (Na: 7) - The Crystal Structure of LY7917
Other atoms:
Cl (6);
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5d77 (Na: 1) - Structure of MIP6 RRM3 Domain
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5d7z (Na: 1) - Crystal Structure of Glyoxalase I From Zea Mays
Other atoms:
Ni (1);
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5d8g (Na: 1) - A Structural View on the Dissociation of E. Coli Tryptophanase
Other atoms:
Mg (3);
Ca (1);
Cl (1);
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5d8h (Na: 4) - Crystal Structure of the Base of the Ribosomal P Stalk From Methanococcus Jannaschii with Antibiotic Thiostrepton
Other atoms:
Mg (11);
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5d8x (Na: 24) - 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
Other atoms:
K (6);
Fe (12);
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5d9t (Na: 1) - Crystal Structure of Dehydroascorbate Reductase (Osdhar) From Oryza Sativa L. Japonica
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5db6 (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the N7MG Base Paired with A Dc
Other atoms:
F (1);
-
5db7 (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the N7MG Base Paired with A Dt
Other atoms:
F (1);
-
5db8 (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the N7MG Base Paired with A Da
Other atoms:
F (1);
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5db9 (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the N7MG Base Paired with A Dg
Other atoms:
F (1);
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5dba (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the Dg Base Paired with A Dt
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5dbb (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the Dg Base Paired with A Da
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5dbc (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the Dg Base Paired with A Dg
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5ddm (Na: 1) - Human Dna Polymerase Lambda- Apoenzyme and Complex with 6 Paired Dna
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5ddp (Na: 10) - L-Glutamine Riboswitch Bound with L-Glutamine
Other atoms:
Mg (9);
Page generated: Tue Feb 25 11:36:27 2025
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