Sodium in PDB 5d5s: Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant

All present enzymatic activity of Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant:
4.4.1.11;

The structure of Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant, PDB code: 5d5s was solved by S.V.Revtovich, A.D.Nikulin, N.V.Anufrieva, E.A.Morozova, T.V.Demidkina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.70
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	56.659, 123.090, 128.785, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 20.5

The binding sites of Sodium atom in the Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant (pdb code 5d5s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant, PDB code: 5d5s:

Sodium binding site 1 out of 1 in the Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:44.2 occ:0.88 O A:HOH515 2.3 34.9 1.0 O A:HOH520 2.4 38.5 1.0 NZ A:LYS259 2.8 27.8 1.0 NE2 A:GLN18 3.3 20.9 1.0 CE A:LYS259 3.4 25.8 1.0 CD A:GLN18 3.5 24.1 1.0 OE1 A:GLN18 3.7 22.7 1.0 O A:LEU27 3.7 27.6 1.0 CB A:GLN18 4.1 26.8 1.0 O A:HOH738 4.2 28.6 1.0 CG A:GLN18 4.3 26.6 1.0 CA A:SER28 4.5 24.5 1.0 OG1 A:THR29 4.5 26.0 1.0 N A:THR29 4.5 23.0 1.0 C A:LEU27 4.6 29.3 1.0 CD1 A:LEU27 4.7 34.7 1.0 CD A:LYS259 4.9 27.6 1.0 O A:VAL14 4.9 20.8 1.0 C A:SER28 4.9 23.9 1.0 N A:SER28 4.9 25.3 1.0 CG A:LEU27 4.9 31.6 1.0

S.V.Revtovich, A.D.Nikulin, N.V.Anufrieva, E.A.Morozova, T.V.Demidkina. The Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii, S339A Mutant To Be Published.